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Linear causal models are important tools for modeling causal dependencies and yet in practice, only a subset of the variables can be observed. In this paper, we examine the parameter identifiability of these models by investigating whether…

机器学习 · 计算机科学 2025-02-11 Xinshuai Dong , Ignavier Ng , Biwei Huang , Yuewen Sun , Songyao Jin , Roberto Legaspi , Peter Spirtes , Kun Zhang

We present an empirical algorithm to forecast the evolution of the number of COVID-19 symptomatic patients in the early stages of the pandemic spread and after strict social distancing interventions. The algorithm is based on a low…

种群与进化 · 定量生物学 2020-11-20 Luis Alvarez

The data of the 2009 A(H1N1) epidemic in Istanbul, Turkey is unique in terms of the collected data, which include not only the hospitalization but also the fatality information recorded during the pandemic. The analysis of this data…

种群与进化 · 定量生物学 2020-01-29 Ali Demirci , Ayse Peker Dobie , Ayse Humeyra Bilge , Semra Ahmetolan

Throughout the course of an epidemic, the rate at which disease spreads varies with behavioral changes, the emergence of new disease variants, and the introduction of mitigation policies. Estimating such changes in transmission rates can…

统计方法学 · 统计学 2022-11-29 Jenny Huang , Raphaël Morsomme , David Dunson , Jason Xu

The evolution of epidemiological parameters, such as instantaneous reproduction number Rt, is important for understanding the transmission dynamics of infectious diseases. Current estimates of time-varying epidemiological parameters often…

应用统计 · 统计学 2021-10-26 Xian Yang , Shuo Wang , Yuting Xing , Ling Li , Richard Yi Da Xu , Karl J. Friston , Yike Guo

Highly-interconnected societies difficult to model the spread of infectious diseases such as COVID-19. Single-region SIR models fail to account for incoming forces of infection and expanding them to a large number of interacting regions…

机器学习 · 计算机科学 2023-11-06 Adrian Rojas-Campos , Lukas Stelz , Pascal Nieters

Covid-19 is one of the most dreaded pandemics/epidemics in the world threatening the human population. The dynamics of this pandemic is quite complicated and prediction of pandemic states often fails. In this work, we study and correlate…

种群与进化 · 定量生物学 2021-10-06 Jyoti Bhadana , R. K. Brojen Singh

We propose a simple SIR model in order to investigate the impact of various confinement strategies on a most virulent epidemic. Our approach is motivated by the current COVID-19 pandemic. The main hypothesis is the existence of two…

种群与进化 · 定量生物学 2020-12-30 G. Nakamura , B. Grammaticos , M. Badoual

Compartmental models like the Susceptible-Infected-Recovered (SIR)\cite{Kermack1927} and its extensions such as the Susceptible-Exposed-Infected-Recovered (SEIRS)\cite{Ottar2020,Ignazio2021,Grimm2021,Paoluzzi2021} are commonly used to model…

种群与进化 · 定量生物学 2025-07-14 Kasturi Banerjee , Subhankar Ray , Jayalakshmi Shamanna

The SIR model is one of the most prototypical compartmental models in epidemiology. Generalizing this ordinary differential equation (ODE) framework into a spatially distributed partial differential equation (PDE) model is a considerable…

定量方法 · 定量生物学 2024-07-11 Su Yang , Weiqi Chu , Panayotis Kevrekidis

Global pandemics, such as the recent COVID-19 crisis, highlight the need for stochastic epidemic models that can capture the randomness inherent in the spread of disease. Such models must be accompanied by methods for estimating parameters…

定量方法 · 定量生物学 2026-04-13 Vincent Wieland , Nils Wassmuth , Lorenzo Contento , Martin Kühn , Jan Hasenauer

We consider the Susceptible-Infected-Recovered (SIR) epidemic model on a Euclidean network in one dimension in which nodes at a distance $l$ are connected with probability $P(l) \propto l^{-\delta}$ in addition to nearest neighbors. The…

物理与社会 · 物理学 2014-07-04 Abdul Khaleque , Parongama Sen

In this work, we adapt the epidemiological SIR model to study the evolution of the dissemination of COVID-19 in Germany and Brazil (nationally, in the State of Paraiba, and in the City of Campina Grande). We prove the well posedness and the…

种群与进化 · 定量生物学 2022-04-20 Adriano A. Batista , Severino Horácio da Silva

In Part 1, we introduced a stochastic model of an infectious disease, based on the BDI (birth and death with immigration) process. We showed that random processes defined by this model can capture the essence of the stochastic, often…

种群与进化 · 定量生物学 2021-01-28 Hisashi Kobayashi

The epidemic spreading on arbitrary complex networks is studied in SIR (Susceptible Infected Recovered) compartment model. We propose our implementation of a Naive SIR algorithm for epidemic simulation spreading on networks that uses data…

数据结构与算法 · 计算机科学 2015-03-20 Nino Antulov-Fantulin , Alen Lancic , Hrvoje Stefancic , Mile Sikic

We present a method of parameter estimation for large class of nonlinear systems, namely those in which the state consists of output derivatives and the flow is linear in the parameter. The method, which solves for the unknown parameter by…

系统与控制 · 电气工程与系统科学 2024-07-16 Simon Kuang , Xinfan Lin

The infection dynamics of a population under stationary isolation conditions is modeled. It is underlined that the stationary character of the isolation measures can be expected to imply that an effective SIR model with constant parameters…

种群与进化 · 定量生物学 2021-10-19 Alejandro Cabo Montes de Oca , Nana Geraldine Cabo Bizet

We present an interval-based approach for parameter identification in structural static inverse problems. The proposed inverse formulation exploits the Interval Finite Element Method (IFEM) combined with adjoint-based optimization. The…

数值分析 · 数学 2014-09-08 Naijia Xiao , Francesco Fedele , Rafi Muhanna

Accurate models of patient survival probabilities provide important information to clinicians prescribing care for life-threatening and terminal ailments. A recently developed class of models - known as individual survival distributions…

机器学习 · 计算机科学 2019-06-27 Samuel Sokota , Ryan D'Orazio , Khurram Javed , Humza Haider , Russell Greiner

An ultrametric model of epidemic spread of infections based on the classical SIR model is proposed. Ultrametrics on a set of individuals based on theire hierarchical clustering relativly to the average time of infectious contact is…

物理与社会 · 物理学 2020-07-21 V. T. Volov , A. P. Zubarev