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We propose a simple algorithm to train stochastic neural networks to draw samples from given target distributions for probabilistic inference. Our method is based on iteratively adjusting the neural network parameters so that the output…

机器学习 · 统计学 2017-11-01 Yihao Feng , Dilin Wang , Qiang Liu

Background and Objectives: The mechanics of the nucleus depends on cellular structures and architecture, and impact a number of diseases. Nuclear mechanics is yet rather complex due to heterogeneous distribution of dense heterochromatin and…

医学物理 · 物理学 2023-09-29 Yue Mei , Xuan Feng , Yun Jin , Rongyao Kang , Xinyu Wang , Dongmei Zhao , Soham Ghosh , Corey P Neu , Stephane Avril

Abdominal aortic aneurysm (AAA) is a life-threatening condition characterized by permanent enlargement of the aorta, often detected incidentally during imaging for unrelated conditions. Current management relies primarily on aneurysm…

计算工程、金融与科学 · 计算机科学 2025-11-25 Saeideh Sekhavat , Mostafa Jamshidian , Adam Wittek , Karol Miller

We present a mathematical model that describes how tumour heterogeneity evolves in a tissue slice that is oxygenated by a single blood vessel. Phenotype is identified with the stemness level of a cell, $s$, that determines its proliferative…

细胞行为 · 定量生物学 2023-11-14 Giulia L. Celora , Helen M. Byrne , P. G. Kevrekidis

Mounting evidence underscores the prevalent hierarchical organization of cancer tissues. At the foundation of this hierarchy reside cancer stem cells, a subset of cells endowed with the pivotal role of engendering the entire cancer tissue…

应用统计 · 统计学 2023-08-21 Shuli Chen , Yuman Wang , Da Zhou , Jie Hu

In this paper, we present a novel tolerance allocation algorithm for the assessment and control of geometric variation on system performance that is applicable to any system of partial differential equations. In particular, we parameterize…

数值分析 · 数学 2019-04-16 Joseph Benzaken , Alireza Doostan , John A. Evans

We explore the connection between a stochastic simulation model and an ordinary differential equations (ODEs) model of the dynamics of an excitable gene circuit that exhibits noise-induced oscillations. Near a bifurcation point in the ODE…

分子网络 · 定量生物学 2012-04-26 Robert C. Hilborn , Benjamin Brookshire , Jenna Mattingly , Anusha Purushotham , Anuraag Sharma

Medical imaging only indirectly measures the molecular identity of the tissue within each voxel, which often produces only ambiguous image evidence for target measures of interest, like semantic segmentation. This diversity and the…

The recent experimental progresses in handling microscopic systems have allowed to probe them at levels where fluctuations are prominent, calling for stochastic modeling in a large number of physical, chemical and biological phenomena. This…

统计力学 · 物理学 2017-03-08 Stefano Bo , Antonio Celani

The diffusion of molecules in complex intracellular environments can be strongly influenced by spatial heterogeneity and stochasticity. A key challenge when modelling such processes using stochastic random walk frameworks is that negative…

生物物理 · 物理学 2019-01-31 Elliot J. Carr , Matthew J. Simpson

Gene expression is significantly stochastic making modeling of genetic networks challenging. We present an approximation that allows the calculation of not only the mean and variance but also the distribution of protein numbers. We assume…

分子网络 · 定量生物学 2008-12-18 Vahid Shahrezaei , Peter S. Swain

In this work, a hybrid physics-based data-driven surrogate model for the microscale analysis of heterogeneous material is investigated. The proposed model benefits from the physics-based knowledge contained in the constitutive models used…

材料科学 · 物理学 2024-04-30 M. A. Maia , I. B. C. M. Rocha , D. Kovačević , F. P. van der Meer

In this study, we model avascular tumour growth in epithelial tissue. This can help us to get a macroscopic view of the interaction between the tumour with its surrounding microenvironment and the physical changes within the tumour…

组织与器官 · 定量生物学 2019-05-15 Sounak Sadhukhan , S. K. Basu

In the context of structural health monitoring (SHM), the selection and extraction of damage-sensitive features from raw sensor recordings represent a critical step towards solving the inverse problem underlying the identification of…

计算工程、金融与科学 · 计算机科学 2025-12-03 Matteo Torzoni , Andrea Manzoni , Stefano Mariani

Abdominal aortic aneurysm (AAA) is a permanent and irreversible dilation of the lower region of the aorta. It is typically an asymptomatic condition that if left untreated can expand to the point of rupture. Mechanically-speaking, rupture…

Phenotypic variation is a hallmark of cellular physiology. Metabolic heterogeneity, in particular, underpins single-cell phenomena such as microbial drug tolerance and growth variability. Much research has focussed on transcriptomic and…

分子网络 · 定量生物学 2019-01-31 Mona K. Tonn , Philipp Thomas , Mauricio Barahona , Diego A Oyarzún

This article presents an original methodology for the prediction of steady turbulent aerodynamic fields. Due to the important computational cost of high-fidelity aerodynamic simulations, a surrogate model is employed to cope with the…

流体动力学 · 物理学 2019-12-05 Romain Dupuis , Jean-Christophe Jouhaud , Pierre Sagaut

The theory of mesoscopic fluctuations is applied to inhomogeneous solids consisting of chaotically distributed regions with different crystalline structure. This approach makes it possible to describe statistical properties of such mixture…

统计力学 · 物理学 2015-06-25 V. I. Yukalov

We utilize the externally forced linearized Navier-Stokes equations to study the receptivity of pre-transitional boundary layers to persistent sources of stochastic excitation. Stochastic forcing is used to model the effect of free-stream…

流体动力学 · 物理学 2019-09-09 Wei Ran , Armin Zare , M. J. Philipp Hack , Mihailo R. Jovanović

A stochastic telegraph equation is defined by adding a random inhomogeneity to the classical (second order linear hyperbolic) telegraph differential equation. The inhomogeneities we consider are proportional to the two-dimensional white…

概率论 · 数学 2019-04-10 Alexei Borodin , Vadim Gorin