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Reaction-diffusion models are widely used to study spatially-extended chemical reaction systems. In order to understand how the dynamics of a reaction-diffusion model are affected by changes in its input parameters, efficient methods for…

定量方法 · 定量生物学 2017-03-08 Christopher Lester , Christian A. Yates , Ruth E. Baker

In this study, we explored the utility of a descriptive and predictive bionetwork model for phospholipase C-coupled calcium signaling pathways, built with non-kinetic experimental information. Boolean models generated from these data yield…

分子网络 · 定量生物学 2009-12-14 Gaurav Bhardwaj , Christine P. Wells , Reka Albert , Damian B. van Rossum , Randen L. Patterson

This article is intended for physical scientists who wish to gain deeper insights into machine learning algorithms which we present via the domain they know best, physics. We begin with a review of two energy-based machine learning…

无序系统与神经网络 · 物理学 2021-12-03 Stephon Alexander , Sarah Bawabe , Batia Friedman-Shaw , Michael W. Toomey

Many applications, especially in physics and other sciences, call for easily interpretable and robust machine learning techniques. We propose a fully gradient-based technique for training radial basis function networks with an efficient and…

机器学习 · 计算机科学 2022-09-30 Jussi Määttä , Viacheslav Bazaliy , Jyri Kimari , Flyura Djurabekova , Kai Nordlund , Teemu Roos

Many robotic tasks, such as human-robot interactions or the handling of fragile objects, require tight control and limitation of appearing forces and moments alongside sensible motion control to achieve safe yet high-performance operation.…

机器人学 · 计算机科学 2023-03-09 Janine Matschek , Johanna Bethge , Rolf Findeisen

We introduce a nonlinear stochastic model reduction technique for high-dimensional stochastic dynamical systems that have a low-dimensional invariant effective manifold with slow dynamics, and high-dimensional, large fast modes. Given only…

机器学习 · 统计学 2023-10-25 Felix X. -F. Ye , Sichen Yang , Mauro Maggioni

The macroscopic response of short fiber reinforced composites is dependent on an extensive range of microstructural parameters. Thus, micromechanical modeling of these materials is challenging and in some cases, computationally expensive.…

机器学习 · 计算机科学 2022-10-04 J. Friemann , B. Dashtbozorg , M. Fagerström , S. M. Mirkhalaf

We develop, discuss, and compare several inference techniques to constrain theory parameters in collider experiments. By harnessing the latent-space structure of particle physics processes, we extract extra information from the simulator.…

高能物理 - 唯象学 · 物理学 2018-09-19 Johann Brehmer , Kyle Cranmer , Gilles Louppe , Juan Pavez

Neural Stochastic Differential Equations model a dynamical environment with neural nets assigned to their drift and diffusion terms. The high expressive power of their nonlinearity comes at the expense of instability in the identification…

机器学习 · 计算机科学 2021-03-01 Manuel Haussmann , Sebastian Gerwinn , Andreas Look , Barbara Rakitsch , Melih Kandemir

Direct numerical simulation of hierarchical materials via homogenization-based concurrent multiscale models poses critical challenges for 3D large scale engineering applications, as the computation of highly nonlinear and path-dependent…

计算工程、金融与科学 · 计算机科学 2022-12-29 Shiguang Deng

As a nonlocal extension of continuum mechanics, peridynamics has been widely and effectively applied in different fields where discontinuities in the field variables arise from an initially continuous body. An important component of the…

数值分析 · 数学 2021-09-22 Xiao Xu , Marta D'Elia , John T. Foster

High-intensity laser plasma interactions create complex computational problems because they involve both fluid and kinetic regimes, which need models that maintain physical precision while keeping computational speed. The research…

等离子体物理 · 物理学 2025-10-14 Sadra Saremi , Amirhossein Ahmadkhan Kordbacheh

Simulations at the atomic scale provide a direct and effective way to understand the mechanical properties of materials. In the regime of classical mechanics, simulations for the thermodynamic properties of metals and alloys can be done by…

计算物理 · 物理学 2019-11-05 Ka-Ming Tam , Nicholas Walker , Samuel Kellar , Mark Jarrell

The dynamic, real-time, and accurate inference of model parameters from empirical data is of great importance in many scientific and engineering disciplines that use computational models (such as a digital twin) for the analysis and…

信号处理 · 电气工程与系统科学 2020-06-11 Yuan Tian , Manuel Arias Chao , Chetan Kulkarni , Kai Goebel , Olga Fink

This paper discusses an approach for incorporating prior physical knowledge into the neural network to improve data efficiency and the generalization of predictive models. If the dynamics of a system approximately follows a given…

神经与进化计算 · 计算机科学 2020-05-29 Andrei Ivanov , Uwe Iben , Anna Golovkina

Stochastic models of biochemical reaction networks are widely used to capture intrinsic noise in cellular systems. The typical formulation of these models are based on Markov processes for which there is extensive research on efficient…

分子网络 · 定量生物学 2025-12-03 Thomas P. Steele , David J. Warne

Probabilistic models help us encode latent structures that both model the data and are ideally also useful for specific downstream tasks. Among these, mixture models and their time-series counterparts, hidden Markov models, identify…

机器学习 · 计算机科学 2021-10-29 Abhishek Sharma , Catherine Zeng , Sanjana Narayanan , Sonali Parbhoo , Finale Doshi-Velez

Due largely to challenges associated with physical interpretability of machine learning (ML) methods, and because model interpretability is key to credibility in management applications, many scientists and practitioners are hesitant to…

机器学习 · 计算机科学 2025-11-11 Yuan-Heng Wang , Hoshin V. Gupta

We use a space-time discretization based on physics informed deep learning (PIDL) to approximate solutions of a class of rate-dependent strain gradient plasticity models. The differential equation governing the plastic flow, the so-called…

动力系统 · 数学 2024-08-14 Ankit Tyagi , Uttam Suman , Mariya Mamajiwala , Debasish Roy

We present a novel kernel-based machine learning algorithm for identifying the low-dimensional geometry of the effective dynamics of high-dimensional multiscale stochastic systems. Recently, the authors developed a mathematical framework…