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Aggregation-diffusion equations are foundational tools for modelling biological aggregations. Their principal use is to link the collective movement mechanisms of organisms to their emergent space use patterns in a concrete mathematical…

种群与进化 · 定量生物学 2025-04-16 Jonathan R. Potts

We present a new method, called SISYPHUS (Stochastic Iterations to Strengthen Yield of Path Hopping over Upper States), for extending accessible time-scales in atomistic simulations. The method proceeds by separating phase space into…

材料科学 · 物理学 2015-03-12 Pratyush Tiwary , Axel van de Walle

Quantum walks play a crucial role in quantum algorithms and computational problems. Many-body quantum walks can reveal and exploit quantum correlations that are unavailable for single-walker cases. Studying quantum walks under noise and…

量子物理 · 物理学 2025-10-17 Rohit Kishan Ray , R. Srikanth , Sonjoy Majumder

We extend the analysis of the thermodynamics of the climate system by investigating the role played by processes taking place at various spatial and temporal scales through a procedure of coarse graining. The coarser is the graining of the…

统计力学 · 物理学 2015-06-15 Valerio Lucarini , Salvatore Pascale

Let (M,J) be a dynamical model of macroscopic systems and (N,K) a less microscopic model (i.e. a model involving less details) of the same macroscopic systems; M and N are manifolds, J are vector fields on M, and K are vector fields on N.…

数学物理 · 物理学 2021-03-17 Miroslav Grmela , Vaclav Klika , Michal Pavelka

The parallel mutation-selection evolutionary dynamics, in which mutation and replication are independent events, is solved exactly in the case that the Malthusian fitnesses associated to the genomes are described by the Random Energy Model…

生物物理 · 物理学 2009-10-14 David B. Saakian , José F. Fontanari

When a metal is loaded mechanically at high temperatures, i.e. above 300 $^o$C, its grain microstructure evolves due to multiple physical mechanisms. Two of which are the curvature-driven migration of the grain boundaries due to increased…

材料科学 · 物理学 2024-07-26 Izzet Tarik Tandogan , Michael Budnitzki , Stefan Sandfeld

Entropic Dynamics (ED) is a framework in which Quantum Mechanics (QM) is derived as an application of entropic methods of inference. The magnitude of the wave function is manifestly epistemic: its square is a probability distribution. The…

量子物理 · 物理学 2017-12-29 Ariel Caticha

A new phase field model of microstructural evolution is presented that includes the effects of elastic strain energy. The model's thin interface behavior is investigated by mapping it onto a recent model developed by Echebarria et al (Phys…

材料科学 · 物理学 2008-10-29 Michael Greenwood , Jeffrey J. Hoyt , Nikolas Provatas

The relative entropy for two different degenerate diffusion processes is estimated by using the Wasserstein distance of initial distributions and the difference between coefficients. As applications, the entropy cost inequality and…

概率论 · 数学 2024-05-02 Zhongmin Qian , Panpan Ren , Feng-Yu Wang

Microstructural changes in solids, driven by energy flows, do not develop in a static continuous space, such as the space considered in conventional plasticity models. The applied forces create an evolving internal energy landscape, which…

材料科学 · 物理学 2024-12-19 Elijah Borodin , Afonso D. M. Barroso , Andrey P. Jivkov

The review deals with a novel approach (MNEQT) to nonequilibrium thermodynamics (NEQT) that is based on the concept of internal equilibrium (IEQ) in an enlarged state space involving internal variables as additional state variables. The…

统计力学 · 物理学 2021-12-15 P. D. Gujrati

We apply two independent data analysis methodologies to locate stable climate states in an intermediate complexity climate model and analyze their interplay. First, drawing from the theory of quasipotentials, and viewing the state space as…

大气与海洋物理 · 物理学 2021-07-07 Georgios Margazoglou , Tobias Grafke , Alessandro Laio , Valerio Lucarini

Proteins evolve through complex sequence spaces, with fitness landscapes serving as a conceptual framework that links sequence to function. Fitness landscapes can be smooth, where multiple similarly accessible evolutionary paths are…

The metaphor of a potential epigenetic differentiation landscape broadly suggests that during differentiation a stem cell follows the steepest descending gradient toward a stable equilibrium state which represents the final cell type. It…

细胞行为 · 定量生物学 2020-09-22 K. Wiesner , J. Teles , M. Hartnor , C. Peterson

The equilibrium state of a superfluid in a rotating cylindrical vessel is a vortex crystal -- an array of vortex lines which is stationary in the rotating frame. Experimental realisations of this behaviour typically show a sequence of…

流体动力学 · 物理学 2023-10-31 Andrew Cleary , Jacob Page

The energy landscape dictates pathways and outcomes in supramolecular selfassembly, yet harnessing it from the nano to the macro scales remains a major challenge. Here, we demonstrate liquid liquid phase separation (LLPS) as a powerful tool…

We have calculated the migration barriers for surface diffusion on Tungsten. Our results form a self-sufficient parameterization for Kinetic Monte Carlo simulations of arbitrarily rough atomic tungsten surfaces, as well as nanostructures…

One of the major goals of quantum thermodynamics is the characterization of irreversibility and its consequences in quantum processes. Here, we discuss how entropy production provides a quantification of the irreversibility in open quantum…

In this paper we analyze the performance of the Quantum Adiabatic Evolution algorithm on a variant of Satisfiability problem for an ensemble of random graphs parametrized by the ratio of clauses to variables, $\gamma=M/N$. We introduce a…

量子物理 · 物理学 2009-11-10 V. N. Smelyanskiy , S. Knysh , R. D. Morris
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