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Graph neural networks are widely used to learn global representations of graphs, which are then used for regression or classification tasks. Typically, the graphs in such data sets are connected, i.e. each training sample consists of a…

计算工程、金融与科学 · 计算机科学 2022-11-01 Chen Shao , Zhou Chen , Pascal Friederich

Hydrocarbon pyrolysis is a complex chemical reaction system at extreme temperature and pressure conditions involving large numbers of chemical reactions and chemical species. Only two kinds of atoms are involved: carbons and hydrogens. Its…

化学物理 · 物理学 2026-02-10 Perrin E. Ruth , Vincent Dufour-Decieux , Christopher Moakler , Maria Cameron

The control of chemical reactions is a recurring theme in physics and chemistry. Traditionally, chemical reactions have been investigated by tuning thermodynamic parameters, such as temperature or pressure. More recently, physical methods…

原子物理 · 物理学 2012-09-28 Lothar Ratschbacher , Christoph Zipkes , Carlo Sias , Michael Köhl

Despite significant advances in particle imaging technologies over the past two decades, few advances have been made in particle tracking, i.e. linking individual particle positions across time series data. The state-of-the-art tracking…

软凝聚态物质 · 物理学 2022-01-25 Ella M. King , Zizhao Wang , David A. Weitz , Frans Spaepen , Michael P. Brenner

The primary emphasis of this work on kinetics is to illustrate the a posteriori approach to applications, where focus on data leads to novel outcomes, rather than the a priori tendencies of applied analysis which imposes constructs on the…

综合物理 · 物理学 2011-01-27 Christopher G. Jesudason

Recent realizations of single-atom trapping and tracking in cavity QED open the door for feedback schemes which actively stabilize the motion of a single atom in real time. We present feedback algorithms for cooling the radial component of…

量子物理 · 物理学 2009-11-11 T. W. Lynn , K. Birnbaum , H. J. Kimble

Rydberg atoms are in the focus of intense research due to the peculiar properties which make them interesting candidates for quantum optics and quantum information applications. In this work we study the ionization of Rydberg atoms due to…

原子物理 · 物理学 2023-06-27 K. L. Romans , A. H. N. C. De Silva , B. P. Acharya , K. Foster , O. Russ , D. Fischer

We develop a model-independent reduction method of chemical reaction systems based on the stoichiometry, which determines their network topology. A subnetwork can be eliminated systematically to give a reduced system with fewer degrees of…

分子网络 · 定量生物学 2021-11-25 Yuji Hirono , Takashi Okada , Hiroyasu Miyazaki , Yoshimasa Hidaka

Atomistic simulations have become a powerful tool in materials research due to the extremely fine spatial and temporal resolution provided by such techniques. In order to understand the fundamental principles which govern material behavior…

材料科学 · 物理学 2014-08-26 Jason F. Panzarino , Timothy J. Rupert

We develop a broadly-applicable computational method for the automatic exploration of the bimolecular multi-reaction mechanism. The current methodology mainly involves the high-energy Born-Oppenheimer molecular dynamics (BOMD) simulation…

化学物理 · 物理学 2021-12-24 Qinghai Cui , Jiawei Peng , Chao Xu , Zhenggang Lan

We present a systematic mathematical analysis of the qualitative steady-state response to rate perturbations in large classes of reaction networks. This includes multimolecular reactions and allows for catalysis, enzymatic reactions,…

动力系统 · 数学 2017-11-22 Bernhard Brehm , Bernold Fiedler

The inference of an underlying network topology from local observations of a complex system composed of interacting units is usually attempted by using statistical similarity measures, such as Cross-Correlation (CC) and Mutual Information…

数据分析、统计与概率 · 物理学 2014-09-03 Nicolás Rubido , Arturo C. Martí , Ezequiel Bianco-Martínez , Celso Grebogi , Murilo S. Baptista , Cristina Masoller

Designing model-independent anomaly detection algorithms for analyzing LHC data remains a central challenge in the search for new physics, due to the high dimensionality of collider events. In this work, we develop a graph autoencoder as an…

高能物理 - 唯象学 · 物理学 2025-06-26 Jack Y. Araz , Dimitrios Athanasakos , Mateusz Ploskon , Felix Ringer

We construct a scheme for the preparation, pairwise entanglement via exchange interaction, manipulation, and measurement of individual group-II-like neutral atoms (Yb, Sr, etc.). Group-II-like atoms proffer important advantages over alkali…

量子物理 · 物理学 2008-12-03 R. Stock , N. S. Babcock , M. G. Raizen , B. C. Sanders

We provide a category theoretical framework capturing two approaches to graph-based models of chemistry: formal reactions and disconnection rules. We model a translation from the latter to the former as a functor, which is faithful, and…

计算机科学中的逻辑 · 计算机科学 2024-10-03 Ella Gale , Leo Lobski , Fabio Zanasi

Measuring similarity between complex objects is a fundamental task in many scientific fields. When objects are represented as graphs, graph similarity/distance measures offer a powerful framework for quantifying structural resemblance.…

This paper deals with the Cayley graph $\Cay,$ where the generating set consists of all block transpositions. A motivation for the study of these particular Cayley graphs comes from current research in Bioinformatics. We prove that…

组合数学 · 数学 2015-04-03 Annachiara Korchmaros

We develop random graph models where graphs are generated by connecting not only pairs of vertices by edges but also larger subsets of vertices by copies of small atomic subgraphs of arbitrary topology. This allows the for the generation of…

统计理论 · 数学 2021-04-21 Anatol E. Wegner , Sofia Olhede

A cascade of two-level superconducting artificial atoms -- a source and a probe -- strongly coupled to a semi-infinite waveguide is a promising tool for observing nontrivial phenomena in quantum nonlinear optics. The probe atom can scatter…

Macroscopic arrays of cold atoms trapped in optical cavities can reach the strong atom-light collective coupling regime thanks to the simultaneous interactions of the cavity mode with the atomic ensemble. In a recent work we reported a…

量子物理 · 物理学 2020-12-02 Diego Barberena , Robert J. Lewis-Swan , Ana Maria Rey , James K. Thompson