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Two basic features of assemblages of unicellular plankton: (1) their high biodiversity and (2) the power-law structure of their abundance, can be explained by an allometric scaling of cell growth and mortality with respect to cell size. To…

种群与进化 · 定量生物学 2017-05-16 Richard Law , José A. Cuesta , Gustav W. Delius

Growth-fragmentation processes model systems of cells that grow continuously over time and then fragment into smaller pieces. Typically, on average, the number of cells in the system exhibits asynchronous exponential growth and, upon…

概率论 · 数学 2023-06-08 Emma Horton , Alexander R. Watson

Theoretical and computational tools that can be used in the clinic to predict neoplastic progression and propose individualized optimal treatment strategies to control cancer growth is desired. To develop such a predictive model, one must…

细胞行为 · 定量生物学 2015-05-20 Salvatore Torquato

Cancer research has shifted from a purely gene-centric view to a more holistic understanding that recognizes the critical role of the tumour microenvironment, where mechanics and metabolism are key drivers of disease progression. However,…

计算工程、金融与科学 · 计算机科学 2025-12-19 Pedro Garcia-Gomez , Paula Guerrero-Lopez , Silvia Hervas-Raluy , Jose Manuel Garcia-Aznar

We design a stochastic individual-based model structured in energy, for single species consuming an external resource, where populations are characterized by a typical energy at birth in $\mathbb{R}^{*}_{+}$. The resource is maintained at a…

概率论 · 数学 2025-01-27 Sylvain Billiard , Virgile Brodu , Nicolas Champagnat , Coralie Fritsch

Here we review the development of protein scaling theory, starting from backgrounds in mathematics and statistical mechanics, and leading to biomedical applications. Evolution has organized each protein family in different ways, but scaling…

其他定量生物学 · 定量生物学 2016-10-14 J. C. Phillips

We consider a biphasic continuum model for avascular tumour growth in two spatial dimensions, in which a cell phase and a fluid phase follow conservation of mass and momentum. A limiting nutrient that follows a diffusion process controls…

数值分析 · 数学 2020-10-21 Jerome Droniou , Jennifer A. Flegg , Gopikrishnan C. Remesan

The response of a many body system to a time dependent coupling which passes through or approaches a critical point displays universal scaling behavior. In some regimes, scaling laws have been known since the 1970's. Recently holographic…

高能物理 - 理论 · 物理学 2016-10-13 Sumit R. Das

What scaling limits govern neural network training dynamics when model size and training time grow in tandem? We show that despite the complex interactions between architecture, training algorithms, and data, compute-optimally trained…

机器学习 · 计算机科学 2025-07-08 Shikai Qiu , Lechao Xiao , Andrew Gordon Wilson , Jeffrey Pennington , Atish Agarwala

Current mathematical frameworks for predicting the flux state and macromolecular composition of the cell do not rely on thermodynamic constraints to determine the spontaneous direction of reactions. These predictions may be biologically…

最优化与控制 · 数学 2020-08-14 Amir Akbari , Bernhard O. Palsson

We study universal traits which emerge both in real-world complex datasets, as well as in artificially generated ones. Our approach is to analogize data to a physical system and employ tools from statistical physics and Random Matrix Theory…

机器学习 · 计算机科学 2024-04-08 Noam Levi , Yaron Oz

We scrutinize the temporally-resolved speed of active cargo transport in living cells, and show intermittent bursting motions. These nonlinear fluctuations follow a scaling law over several decades of time and space, the statistical…

亚细胞过程 · 定量生物学 2015-06-16 Bo Wang , James Kuo , Steve Granick

Populations can evolve in order to adapt to external changes. The capacity to evolve and adapt makes successful treatment of infectious diseases and cancer difficult. Indeed, therapy resistance has quickly become a key challenge for global…

种群与进化 · 定量生物学 2015-06-22 Andrej Fischer , Ignacio Vazquez-Garcia , Ville Mustonen

Resistance to chemotherapies, particularly to anticancer treatments, is an increasing medical concern. Among the many mechanisms at work in cancers, one of the most important is the selection of tumor cells expressing resistance genes or…

偏微分方程分析 · 数学 2012-07-05 Alexander Lorz , Tommaso Lorenzi , Michael E. Hochberg , Jean Clairambault , Benoit Perthame

Metabolic scaling is one of the most important patterns in biology. Theory explaining the 3/4-power size-scaling of biological metabolic rate does not predict the non-linear scaling observed for smaller life forms. Here we present a new…

生物物理 · 物理学 2024-03-04 Mark E. Ritchie , Christopher P. Kempes

Cancer is a complex disease that is characterized by uncontrolled growth and division of cells. It involves a complex interplay between genetic and environmental factors that lead to the initiation and progression of tumors. Recent advances…

生物大分子 · 定量生物学 2025-02-07 Reza Bozorgpour

Stable limit cycle as a stabilized mechanical oscillation is the primary result of the dynamical evolution of an optomechanical system under sufficiently powerful pump. Because this dynamical process is highly nonlinear, it was not clear…

光学 · 物理学 2024-10-15 Han Xiao Zhang , Vitalie Eremeev , Jinhui Wu , Miguel Orszag , Bing He

Geometric constraints impact the formation of a broad range of spatial networks, from amino acid chains folding to proteins structures to rearranging particle aggregates. How the network of interactions dynamically self-organizes in such…

分子网络 · 定量生物学 2016-10-19 Nora Molkenthin , Marc Timme

In this manuscript, we study a nonlinear model of tumor growth, described by a coupled hyperbolic-elliptic system of partial differential equations. In this model, the compressible flow of tumor cells is modeled by a transport equation for…

偏微分方程分析 · 数学 2025-08-27 Jeffrey Kuan , Konstantina Trivisa

This paper investigates cells proliferation dynamics in small tumor cell aggregates using an individual based model (IBM). The simulation model is designed to study the morphology of the cell population and of the cell lineages as well as…