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In recent years, owing to the outstanding performance in graph representation learning, graph neural network (GNN) techniques have gained considerable interests in many real-world scenarios, such as recommender systems and social networks.…

机器学习 · 计算机科学 2021-12-09 Weibin Li , Mingkai He , Zhengjie Huang , Xianming Wang , Shikun Feng , Weiyue Su , Yu Sun

In this paper, we review recent developments and the role of Graph Neural Networks (GNNs) in computational drug discovery, including molecule generation, molecular property prediction, and drug-drug interaction prediction. By summarizing…

机器学习 · 计算机科学 2025-06-03 Zhengyu Fang , Xiaoge Zhang , Anyin Zhao , Xiao Li , Huiyuan Chen , Jing Li

Community detection in graphs has many important and fundamental applications including in distributed systems, compression, image segmentation, divide-and-conquer graph algorithms such as nested dissection, document and word clustering,…

社会与信息网络 · 计算机科学 2019-06-18 Ryan A. Rossi , Nesreen K. Ahmed , Eunyee Koh , Sungchul Kim

Identifying cancer driver genes is crucial for understanding tumor biology and developing precision therapies. However, existing computational methods often rely on single biological networks or population-level mutation patterns, limiting…

定量方法 · 定量生物学 2026-01-06 Xueqing Xu , Yonghang Gao , Duanchen Sun , Ling-Yun Wu

Dementia is a progressive neurodegenerative disorder with multiple etiologies, including Alzheimer's disease, Parkinson's disease, frontotemporal dementia, and vascular dementia. Its clinical and biological heterogeneity makes diagnosis and…

机器学习 · 计算机科学 2025-09-24 Niharika Tewari , Nguyen Linh Dan Le , Mujie Liu , Jing Ren , Ziqi Xu , Tabinda Sarwar , Veeky Baths , Feng Xia

Graph Neural Networks (GNNs) have recently emerged as a robust framework for graph-structured data. They have been applied to many problems such as knowledge graph analysis, social networks recommendation, and even Covid19 detection and…

软件工程 · 计算机科学 2022-01-04 Thanh-Dat Nguyen , Thanh Le-Cong , ThanhVu H. Nguyen , Xuan-Bach D. Le , Quyet-Thang Huynh

Graph neural networks (GNN) are increasingly used to classify EEG for tasks such as emotion recognition, motor imagery and neurological diseases and disorders. A wide range of methods have been proposed to design GNN-based classifiers.…

神经元与认知 · 定量生物学 2023-12-21 Dominik Klepl , Min Wu , Fei He

Graph Neural Networks (GNNs) have emerged as a powerful tool for learning from graph-structured data. However, even state-of-the-art architectures have limitations on what structures they can distinguish, imposing theoretical limits on what…

机器学习 · 计算机科学 2023-07-03 Eren Akbiyik , Florian Grötschla , Beni Egressy , Roger Wattenhofer

Complex networks are relational data sets commonly represented as graphs. The analysis of their intricate structure is relevant to many areas of science and commerce, and data sets may reach sizes that require distributed storage and…

分布式、并行与集群计算 · 计算机科学 2016-01-05 Jannis Koch , Christian L. Staudt , Maximilian Vogel , Henning Meyerhenke

Multi-omics data offer unprecedented insights into complex biological systems, yet their high dimensionality, sparsity, and intricate interactions pose significant analytical challenges. Network-based approaches have advanced multi-omics…

Graph embedding learning that aims to automatically learn low-dimensional node representations, has drawn increasing attention in recent years. To date, most recent graph embedding methods are evaluated on social and information networks…

Community detection in graphs is the problem of finding groups of vertices which are more densely connected than they are to the rest of the graph. This problem has a long history, but it is undergoing a resurgence of interest due to the…

计算复杂性 · 计算机科学 2017-08-25 Cristopher Moore

Graph learning has become essential in various domains, including recommendation systems and social network analysis. Graph Neural Networks (GNNs) have emerged as promising techniques for encoding structural information and improving…

机器学习 · 计算机科学 2024-10-10 Lianghao Xia , Ben Kao , Chao Huang

The main goal of the multitasking optimization paradigm is to solve multiple and concurrent optimization tasks in a simultaneous way through a single search process. For attaining promising results, potential complementarities and synergies…

神经与进化计算 · 计算机科学 2020-10-01 Eneko Osaba , Esther Villar-Rodriguez , Javier Del Ser

Large-scale "pre-train and prompt learning" paradigms have demonstrated remarkable adaptability, enabling broad applications across diverse domains such as question answering, image recognition, and multimodal retrieval. This approach fully…

Multi-label networks with branches are proved to perform well in both accuracy and speed, but lacks flexibility in providing dynamic extension onto new labels due to the low efficiency of re-work on annotating and training. For multi-label…

计算机视觉与模式识别 · 计算机科学 2020-04-28 Chunhua Jia , Lei Zhang , Hui Huang , Weiwei Cai , Hao Hu , Rohan Adivarekar

With the emergence of social networks, online platforms dedicated to different use cases, and sensor networks, the emergence of large-scale graph community detection has become a steady field of research with real-world applications.…

社会与信息网络 · 计算机科学 2024-08-09 Elena-Simona Apostol , Adrian-Cosmin Cojocaru , Ciprian-Octavian Truică

Graph neural network (GNN) is a popular tool to learn the lower-dimensional representation of a graph. It facilitates the applicability of machine learning tasks on graphs by incorporating domain-specific features. There are various options…

机器学习 · 计算机科学 2020-08-21 Md. Khaledur Rahman

We recently proposed a new ensemble clustering algorithm for graphs (ECG) based on the concept of consensus clustering. We validated our approach by replicating a study comparing graph clustering algorithms over benchmark graphs, showing…

机器学习 · 计算机科学 2021-02-17 Valérie Poulin , François Théberge

With the recent availability of tissue-specific gene expression data, e.g., provided by the GTEx Consortium, there is interest in comparing gene co-expression patterns across tissues. One promising approach to this problem is to use a…

分子网络 · 定量生物学 2023-12-11 Madison Russell , Alber Aqil , Marie Saitou , Omer Gokcumen , Naoki Masuda
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