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With the advances of data-driven machine learning research, a wide variety of prediction problems have been tackled. It has become critical to explore how machine learning and specifically deep learning methods can be exploited to analyse…

机器学习 · 计算机科学 2021-11-09 David Ahmedt-Aristizabal , Mohammad Ali Armin , Simon Denman , Clinton Fookes , Lars Petersson

The integration of Artificial Intelligence (AI) into the field of drug discovery has been a growing area of interdisciplinary scientific research. However, conventional AI models are heavily limited in handling complex biomedical structures…

机器学习 · 计算机科学 2024-07-25 Zhiqiang Zhong , Anastasia Barkova , Davide Mottin

We propose a novel graph-driven generative model, that unifies multiple heterogeneous learning tasks into the same framework. The proposed model is based on the fact that heterogeneous learning tasks, which correspond to different…

机器学习 · 计算机科学 2019-11-21 Wenlin Wang , Hongteng Xu , Zhe Gan , Bai Li , Guoyin Wang , Liqun Chen , Qian Yang , Wenqi Wang , Lawrence Carin

The task of data integration for multi-omics data has emerged as a powerful strategy to unravel the complex biological underpinnings of cancer. Recent advancements in graph neural networks (GNNs) offer an effective framework to model…

机器学习 · 计算机科学 2025-06-24 Payam Zohari , Mostafa Haghir Chehreghani

The exploration of Graph Neural Networks (GNNs) for processing graph-structured data has expanded, particularly their potential for causal analysis due to their universal approximation capabilities. Anticipated to significantly enhance…

机器学习 · 计算机科学 2024-01-30 Simi Job , Xiaohui Tao , Taotao Cai , Lin Li , Haoran Xie , Jianming Yong

Graph Neural Networks (GNNs) have become essential in interpreting relational data across various domains, yet, they often struggle to generalize to unseen graph data that differs markedly from training instances. In this paper, we…

机器学习 · 计算机科学 2024-12-10 Xinke Jiang , Rihong Qiu , Yongxin Xu , Wentao Zhang , Yichen Zhu , Ruizhe Zhang , Yuchen Fang , Xu Chu , Junfeng Zhao , Yasha Wang

Community detection is crucial in data mining. Traditional methods primarily focus on graph structure, often neglecting the significance of attribute features. In contrast, deep learning-based approaches incorporate attribute features and…

社会与信息网络 · 计算机科学 2025-11-11 Hong Wang , Yinglong Zhang , Zhangqi Zhao , Zhicong Cai , Xuewen Xia , Xing Xu

Recommender systems aim to provide personalized services to users and are playing an increasingly important role in our daily lives. The key of recommender systems is to predict how likely users will interact with items based on their…

信息检索 · 计算机科学 2022-04-26 Wenqi Fan , Xiaorui Liu , Wei Jin , Xiangyu Zhao , Jiliang Tang , Qing Li

Federated training of Graph Neural Networks (GNN) has become popular in recent years due to its ability to perform graph-related tasks under data isolation scenarios while preserving data privacy. However, graph heterogeneity issues in…

机器学习 · 计算机科学 2023-09-22 Qiying Pan , Ruofan Wu , Tengfei Liu , Tianyi Zhang , Yifei Zhu , Weiqiang Wang

Community structure identification has been an important research topic in complex networks and there has been many algorithms proposed so far to detect community structures in complex networks, where most of the algorithms are not suitable…

无序系统与神经网络 · 物理学 2012-01-04 Mursel Tasgin , Haluk Bingol

Graph-based analyses have gained a lot of relevance in the past years due to their high potential in describing complex systems by detailing the actors involved, their relations and their behaviours. Nevertheless, in scenarios where these…

机器学习 · 计算机科学 2021-06-11 Francesco Zola , Lander Segurola , Jan Lukas Bruse , Mikel Galar Idoate

Graph Representation Learning (GRL) has become essential for modern graph data mining and learning tasks. GRL aims to capture the graph's structural information and exploit it in combination with node and edge attributes to compute…

机器学习 · 计算机科学 2021-09-08 Marinos Poiitis , Pavlos Sermpezis , Athena Vakali

Deep graph learning has gained grand popularity over the past years due to its versatility and success in representing graph data across a wide range of domains. However, the pervasive issue of imbalanced graph data distributions, where…

Graphs, such as social networks, word co-occurrence networks, and communication networks, occur naturally in various real-world applications. Analyzing them yields insight into the structure of society, language, and different patterns of…

社会与信息网络 · 计算机科学 2019-08-22 Palash Goyal , Emilio Ferrara

Community detection refers to the task of discovering groups of vertices sharing similar properties or functions so as to understand the network data. With the recent development of deep learning, graph representation learning techniques…

人工智能 · 计算机科学 2019-12-17 Yuting Jia , Qinqin Zhang , Weinan Zhang , Xinbing Wang

Convolutional Neural Networks (CNNs) have recently led to incredible breakthroughs on a variety of pattern recognition problems. Banks of finite impulse response filters are learned on a hierarchy of layers, each contributing more abstract…

计算机视觉与模式识别 · 计算机科学 2017-07-18 Felipe Petroski Such , Shagan Sah , Miguel Dominguez , Suhas Pillai , Chao Zhang , Andrew Michael , Nathan Cahill , Raymond Ptucha

Graphs serve as fundamental descriptors for systems composed of interacting elements, capturing a wide array of data types, from molecular interactions to social networks and knowledge graphs. In this paper, we present an exhaustive review…

机器学习 · 计算机科学 2024-11-13 Chenqing Hua

A community reveals the features and connections of its members that are different from those in other communities in a network. Detecting communities is of great significance in network analysis. Despite the classical spectral clustering…

社会与信息网络 · 计算机科学 2022-04-21 Xing Su , Shan Xue , Fanzhen Liu , Jia Wu , Jian Yang , Chuan Zhou , Wenbin Hu , Cecile Paris , Surya Nepal , Di Jin , Quan Z. Sheng , Philip S. Yu

Recent advances in deep learning have accelerated its use in various applications, such as cellular image analysis and molecular discovery. In molecular discovery, a generative adversarial network (GAN), which comprises a discriminator to…

机器学习 · 计算机科学 2023-04-13 Daniel Manu , Jingjing Yao , Wuji Liu , Xiang Sun

Graph neural networks (GNNs) are increasingly used to model biological systems, yet the reliability of post-hoc explanation methods for recovering meaningful molecular mechanisms remains unclear. Here, we systematically evaluate four widely…

分子网络 · 定量生物学 2026-05-22 Kyle Higgins , Ivan Laponogov , Dennis Veselkov , Kirill Veselkov