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Through experimental studies, many details of the pathway of integrin $\alpha_{\rm IIb}\beta_3$ activation by ADP during the platelet aggregation process have been mapped out. ADP binds to two separate G protein coupled receptors on…

分子网络 · 定量生物学 2025-03-26 Keshav B. Patel , Wolfgang Bergmeier , Aaron L. Fogelson

Integrin is an important transmembrane receptor protein which remodels the actin network and anchors the cell membrane towards the extracellular matrix via mechanochemical pathways. The clustering of specific lipids and lipid-anchored…

生物物理 · 物理学 2022-08-05 Tapas Singha , Anirban Polley , Mustansir Barma

Integrins are allosteric cell adhesion receptors that control many important processes, including cell migration, proliferation, and apoptosis. Ligand binding activates integrins by stabilizing an integrin conformation with separated…

定量方法 · 定量生物学 2010-07-16 Federico Felizzi , Dagmar Iber

The protein NLRP3 and its complexes are associated with an array of inflammatory pathologies, among which neurodegenerative, autoimmune, and metabolic diseases. Targeting the NLRP3 inflammasome represents a promising strategy for easing the…

Integrins mediate cell adhesion and are essential receptors for the development and functioning of multicellular organisms. Integrin activation is known to require both ligand and talin binding and to correlate with cluster formation but…

分子网络 · 定量生物学 2007-05-23 Dagmar Iber , Iain D Campbell

Intrinsically disordered proteins participate in many biological processes by folding upon binding with other proteins. However, coupled folding and binding processes are not well understood from an atomistic point of view. One of the main…

生物大分子 · 定量生物学 2023-02-22 Pablo Herrera-Nieto , Adrià Pérez , Gianni De Fabritiis

Biomembranes wrapping cells and organelles are not only the partitions that separate the insides but also dynamic fields for biological functions accompanied by membrane shape changes. In this review, we discuss the spatiotemporal patterns…

软凝聚态物质 · 物理学 2025-01-22 Hiroshi Noguchi

Aptamers are chemically produced oligonucleotides, able to bind a variety of targets such as drugs, proteins and pathogens with high sensitivity and selectivity. Therefore, aptamers are largely employed for producing label-free biosensors,…

Metamorphic proteins like Lymphotactin are a notable exception of the empirical principle that structured natural proteins possess a unique three dimensional structure. In particular, the human chemokine lymphotactin protein (Ltn) exists in…

生物大分子 · 定量生物学 2009-12-29 Carlo Camilloni , Ludovico Sutto

Small molecules are often found to exhibit extraordinarily diverse biological activities. Metformin is one of them. It is widely used as anti-diabetic drug for type-two diabetes. In addition to that, metformin hydrochloride shows…

生物大分子 · 定量生物学 2018-02-08 Sayantan Mondal , Rudra N Samajdar , Saumyak Mukherjee , Aninda J Bhattacharyya , Biman Bagchi

IL-3 is a hemopoietic growth factor that usually targets blood cell precursors; IL-3R is a cytokine receptor that binds to IL-3. However, IL-3 takes on a different role in the context of glial cells in the nervous system, where studies show…

生物大分子 · 定量生物学 2024-05-14 Arnav Swaroop

Intrinsically disordered proteins (IDPs) do not possess well-defined three-dimensional structures in solution under physiological conditions. We develop all-atom, united-atom, and coarse-grained Langevin dynamics simulations for the IDP…

Iridium-based photosensitizers have attracted significant attention in photodynamic therapy (PDT) due to their exceptional photophysical properties and chemical stability, as well as tunable phosphorescence emission spectrum and high…

化学物理 · 物理学 2026-05-08 Aynur Matyusup , Jia-ying Zhao , Yu-dan Zhang , Qi Zhaoa , Ai-min Ren , Jing-fu Guo

A central question is how the conformational changes of proteins affect their function and the inhibition of this function by drug molecules. Many enzymes change from an open to a closed conformation upon binding of substrate or inhibitor…

生物大分子 · 定量生物学 2013-02-19 Thomas R. Weikl , Bahram Hemmateenejad

A motile cell, when stimulated, shows a dramatic increase in the activity of its membrane, manifested by the appearance of dynamic membrane structures such as lamellipodia, filopodia and membrane ruffles. The external stimulus turns on…

软凝聚态物质 · 物理学 2009-11-11 Nir Gov , Ajay Gopinathan

Mechanical forces acting on cell adhesion receptor proteins regulate a range of cellular functions by formation and rupture of non-covalent interactions with ligands. Typically, force decreases the lifetimes of intact complexes…

生物大分子 · 定量生物学 2014-06-16 Shaon Chakrabarti , Michael Hinczewski , D. Thirumalai

Integrin signaling regulates cell migration and plays a pivotal role in developmental processes and cancer metastasis. Integrin signaling has been studied extensively and much data is available on pathway components and interactions. Yet…

分子网络 · 定量生物学 2015-05-20 Florian Geier , Georgios Fengos , Dagmar Iber

Rigid-body motions of protein secondary structure are often implicated in mecha-nisms of protein function. In GPCRs, evidence suggests that intracellular loop 2 (IL2) contains a segment characterized as a helix when the activated receptor…

生物大分子 · 定量生物学 2014-06-19 Michael V. LeVine , Jose Manuel Perez-Aguilar , Harel Weinstein

Accurate protein structural ensembles can be determined with metainference, a Bayesian inference method that integrates experimental information with prior knowledge of the system and deals with all sources of uncertainty and errors as well…

定量方法 · 定量生物学 2019-01-24 Thomas Löhr , Carlo Camilloni , Massimiliano Bonomi , Michele Vendruscolo

We use inelastic neutron scattering (INS) and angle-resolved photoemission spectroscopy (ARPES) to study the impact of Li doping on the semiconducting altermagnet $\alpha$-MnTe. Introducing Li results in a spin reorientation from in-plane…

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