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The edit distance is a basic string similarity measure used in many applications such as text mining, signal processing, bioinformatics, and so on. However, the computational cost can be a problem when we repeat many distance calculations…

The edit distance is a way of quantifying how similar two strings are to one another by counting the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. In this paper we…

We revisit the task of computing the edit distance in sublinear time. In the $(k,K)$-gap edit distance problem the task is to distinguish whether the edit distance of two strings is at most $k$ or at least $K$. It has been established by…

We consider integer programming problems in standard form $\max \{c^Tx : Ax = b, \, x\geq 0, \, x \in Z^n\}$ where $A \in Z^{m \times n}$, $b \in Z^m$ and $c \in Z^n$. We show that such an integer program can be solved in time $(m…

We obtain a characterization on self-orthogonality for a given binary linear code in terms of the number of column vectors in its generator matrix, which extends the result of Bouyukliev et al. (2006). As an application, we give an…

There are efficient dynamic programming solutions to the computation of the Edit Distance from $S\in[1..\sigma]^n$ to $T\in[1..\sigma]^m$, for many natural subsets of edit operations, typically in time within $O(nm)$ in the worst-case over…

Many problems that can be solved in quadratic time have bit-parallel speed-ups with factor $w$, where $w$ is the computer word size. For example, edit distance of two strings of length $n$ can be solved in $O(n^2/w)$ time. In a reasonable…

In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…

We present an algorithm for approximating the edit distance between two strings of length $n$ in time $n^{1+\varepsilon}$ up to a constant factor, for any $\varepsilon>0$. Our result completes a research direction set forth in the recent…

The edit distance between two strings is defined as the smallest number of insertions, deletions, and substitutions that need to be made to transform one of the strings to another one. Approximating edit distance in subquadratic time is…

We present an algorithm for approximating the edit distance $\operatorname{ed}(x, y)$ between two strings $x$ and $y$ in time parameterized by the degree to which one of the strings $x$ satisfies a natural pseudorandomness property. The…

We study the fundamental problem of approximating the edit distance of two strings. After an extensive line of research led to the development of a constant-factor approximation algorithm in almost-linear time, recent years have witnessed a…

The edit distance of two strings is the minimum number of insertions, deletions, and substitutions needed to transform one string into the other. The textbook algorithm determines the edit distance of length-$n$ strings in $O(n^2)$ time,…

We show how to compute the edit distance between two strings of length n up to a factor of 2^{\~O(sqrt(log n))} in n^(1+o(1)) time. This is the first sub-polynomial approximation algorithm for this problem that runs in near-linear time,…

Edit distance is a fundamental measure of distance between strings and has been widely studied in computer science. While the problem of estimating edit distance has been studied extensively, the equally important question of actually…

Suppose that we have two parties that possess each a binary string. Suppose that the length of the first string (document) is $n$ and that the two strings (documents) have edit distance (minimal number of deletes, inserts and substitutions…

Under polynomial time reduction, the maximum likelihood decoding of a linear code is equivalent to computing the error distance of a received word. It is known that the decoding complexity of standard Reed-Solomon codes at certain radius is…

We revisit a fundamental problem in string matching: given a pattern of length m and a text of length n, both over an alphabet of size $\sigma$, compute the Hamming distance between the pattern and the text at every location. Several…

This paper introduces the notion of exact common information, which is the minimum description length of the common randomness needed for the exact distributed generation of two correlated random variables $(X,Y)$. We introduce the quantity…

Given a context free language $\mathcal{L(G)}$ over alphabet $\Sigma$ and a string $s \in \Sigma^*$, {\em the language edit distance} problem seeks the minimum number of edits (insertions, deletions and substitutions) required to convert…