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We investigate the crystallization of crosslinked and entangled polymers under external deformation using a coarse-grained poly(vinyl alcohol) (CG-PVA) model and molecular dynamics simulations. Following uniaxial deformation, the systems…

软凝聚态物质 · 物理学 2026-01-19 Atmika Bhardwaj , Huzaifa Shabbir , Jens-Uwe Sommer , Marco Werner

Ring polymers remain a major challenge to our current understanding of polymer dynamics. Experimental results are difficult to interpret because of the uncertainty in the purity and dispersity of the sample. Using both equilibrium and…

软凝聚态物质 · 物理学 2015-06-03 Jonathan D. Halverson , Gary S. Grest , Alexander Y. Grosberg , Kurt Kremer

Motivated by the structure of networks of cross-linked cytoskeletal biopolymers, we study the orientationally ordered phases in two-dimensional networks of randomly cross-linked semiflexible polymers. We consider permanent cross-links which…

软凝聚态物质 · 物理学 2011-03-08 Martin Kiemes , Panayotis Benetatos , Annette Zippelius

Associative polymers (APs) with reversible, specific interactions between ``sticker'' sites exhibit a phase behavior that depends on a delicate balance between distinct contributions controlling the binding. For highly-bonded systems, it is…

软凝聚态物质 · 物理学 2025-09-17 Francesco Tosti Guerra , Federico Marini , Francesco Sciortino , Lorenzo Rovigatti

Motivated by recent experiments showing nonlinear elasticity of in vitro networks of the biopolymer actin cross-linked with filamin, we present an effective medium theory of flexibly cross-linked stiff polymer networks. We model such…

软凝聚态物质 · 物理学 2008-10-19 C. P. Broedersz , C. Storm , F. C. MacKintosh

Reversible crosslinkers can enable several desirable mechanical properties, such as improved toughness and self-healing, when incorporated in polymer networks for bioengineering and structural applications. In this work, we performed…

软凝聚态物质 · 物理学 2023-10-05 Eesha Khare , Amadeus Alcantara , Nic Lee , Munir S. Skaf , Markus J. Buehler

Aiming at the mechanical properties of cross-linked biopolymers, we set up and analyze a model of two weakly bending wormlike chains subjected to a tensile force, with regularly spaced inter-chain bonds (cross-links) represented by harmonic…

生物物理 · 物理学 2014-06-24 Alice von der Heydt , Daniel Wilkin , Panayotis Benetatos , Annette Zippelius

Sensitive detection of low-abundance molecular targets is widely assumed to require enzymatic amplification, such as PCR, to achieve low detection limits. In amplification-free platforms, sensitivity is traditionally constrained by…

软凝聚态物质 · 物理学 2026-02-25 Xiuyang Xia , Yuhan Peng , Ran Ni

We analyze the interaction of two conducting, charged polymer chains in solution using a minimal model for their electronic degrees of freedom. We show that a crossing of the two chains in which the polymers pass within Angstroms of each…

软凝聚态物质 · 物理学 2009-11-10 Jeremy D. Schmit , Alex J. Levine

Polymer-related materials exhibit rich glassy behaviors at different length scales due to their various molecular structures and topological constraints. Recent studies have identified transient interpenetration of the long-chain rings…

软凝聚态物质 · 物理学 2024-07-08 Jian Li , Bokai Zhang , Yushan Li

The behavior of mobile linkers connecting two semi-flexible charged polymers, such as polyvalent counterions connecting DNA or F-actin chains, is studied theoretically. The chain bending rigidity induces an effective repulsion between…

软凝聚态物质 · 物理学 2009-11-07 I. Borukhov , R. F. Bruinsma , W. M. Gelbart , A. J. Liu

By means of Langevin dynamics simulations, we investigate the gel formation of randomly functionalized polymers in solution, with the ability to form both intra- and intermolecular reversible bonds. Under highly dilute conditions, these…

软凝聚态物质 · 物理学 2021-09-15 Maud Formanek , Lorenzo Rovigatti , Emanuela Zaccarelli , Francesco Sciortino , Angel J. Moreno

We present computer simulations of a simple bead-spring model for polymer melts with intramolecular barriers. By systematically tuning the strength of the barriers, we investigate their role on the glass transition. Dynamic observables are…

软凝聚态物质 · 物理学 2015-05-14 Marco Bernabei , Angel J. Moreno , Juan Colmenero

The glass transition is considered within two toys models, a mean field spin glass and a directed polymer in a correlated random potential. In the spin glass model there occurs a dynamical transition, where the system condenses in a state…

无序系统与神经网络 · 物理学 2009-10-30 Th. M. Nieuwenhuizen

Cells regulate gene expression in part by forming DNA-protein condensates in the nucleus. While existing theories describe the equilibrium size and stability of such condensates, their dynamics remain less understood. Here, we use…

软凝聚态物质 · 物理学 2025-12-22 Adam R. Lamson , Mohammadhossein Firouznia , Michael J. Shelley

I consider the effects of polymers on the smectic phase of a host liquid crystal matrix. Focusing on the regime in which the polymers are predominately confined between the smectic layers, I find that the presence of the polymers can lead…

软凝聚态物质 · 物理学 2009-10-28 Leo Radzihovsky

The problem of the helix-coil transition of biopolymers in explicit solvents, like water, with the ability for hydrogen bonding with solvent is addressed analytically using a suitably modified version of the Generalized Model of Polypeptide…

The relationship between polymer topology and bulk rheology remains a key question in soft matter physics. Architecture-specific constraints (or threadings) are thought to control the dynamics of ring polymers in ring-linear blends, which…

软凝聚态物质 · 物理学 2020-05-04 Angelo Rosa , Jan Smrek , Matthew S Turner , Davide Michieletto

Cells make use of semi-flexible biopolymers such as actin or intermediate filaments to control their local viscoelastic response by dynamically adjusting the concentration and type of cross-linker molecules. The microstructure of the…

软凝聚态物质 · 物理学 2009-11-13 Yuxia Luan , Oliver Lieleg , Bernd Wagner , Andreas R. Bausch

The static and dynamic properties of ring polymers in concentrated solutions remains one of the last deep unsolved questions in Polymer Physics. At the same time, the nature of the glass transition in polymeric systems is also not well…

软凝聚态物质 · 物理学 2016-10-25 Davide Michieletto , Matthew S. Turner