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On a two-dimensional circular domain, we analyze the formation of spatio-temporal patterns for a class of coupled bulk-surface reaction-diffusion models for which a passive diffusion process occurring in the interior bulk domain is linearly…

斑图形成与孤子 · 物理学 2020-08-11 Frédéric Paquin-Lefebvre , Wayne Nagata , Michael J. Ward

In this article, we introduce a new viewpoint on electromagnetic scattering. Tailoring spectral electromagnetic response underpins important applications ranging from sensing to energy conversion, and is flourishing with new ideas from…

光学 · 物理学 2022-11-09 Lang Zhang , Francesco Monticone , Owen D. Miller

We study small oscillations of highly connected systems, which represent a limit opposite to the more familiar case of disordered crystals. As a concrete example we analyze the vibrational spectra of composite pendula. Remarkably, these…

数学物理 · 物理学 2020-12-14 Joshua Feinberg , Roman Riser

We present detailed molecular dynamics results for the displacement autocorrelation spectra of the Peyrard-Bishop model of thermal DNA denaturation. As the phase transition is approached, the spectra depend on whether the wavelength is…

统计力学 · 物理学 2007-05-23 N. Theodorakopoulos , M. Peyrard , T. Dauxois

Sequential scientific data span many resolutions and domains, and unifying them into a common representation is a key step toward developing foundation models for the sciences. Astronomical spectra exemplify this challenge: massive surveys…

The Peyrard-Bishop DNA model describes the molecular interactions with simple potentials which allow efficient calculations of melting temperatures. However, it is based on a Hamiltonian that does not consider the helical twist or any other…

生物大分子 · 定量生物学 2020-07-16 Mateus Rodrigues Leal , Gerald Weber

We show, through a machine learning approach, that the equilibrium distance, harmonic vibrational frequency, and binding energy of diatomic molecules are universally related. In particular, the relationships between spectroscopic constants…

化学物理 · 物理学 2020-05-19 Xiangyue Liu , Gerard Meijer , Jesús Pérez-Ríos

Quantum-chaotic systems exhibit several universal properties, ranging from level repulsion in the energy spectrum to wavefunction delocalization. On the other hand, if wavefunctions are localized, the levels exhibit no level repulsion and…

统计力学 · 物理学 2026-02-19 Simon Jiricek , Miroslav Hopjan , Vladimir Kravtsov , Boris Altshuler , Lev Vidmar

Neutrinos emitted deep within a supernova explosion experience a self-induced index of refraction. In the stationary, one-dimensional (1D) supernova "bulb model", this self-induced refraction can lead to a collective flavor transformation…

高能物理 - 唯象学 · 物理学 2020-01-17 Joshua D. Martin , J. Carlson , Huaiyu Duan

A simple Langevin approach is used to study stationary properties of the Peyrard-Bishop-Dauxois model for DNA, allowing known properties to be recovered in an easy way. Results are shown for the denaturation transition in homogeneous…

软凝聚态物质 · 物理学 2009-11-13 Francisco de los Santos , Omar Al Hammal , Miguel Angel Munoz

The dynamics of the DNA denaturation is studied using the Peyrard-Bishop-Dauxois model. The denaturation rate of double stranded polymers decreases exponentially as function of length below the denaturation temperature. Above Tc, the rate…

生物物理 · 物理学 2015-06-04 Titus S. van Erp , Michel Peyrard

We introduce dissipative spectroscopy as a framework for extracting spectral information from quantum systems via controlled dissipation. By establishing a general dissipative response theory applicable to both Markovian and non-Markovian…

量子物理 · 物理学 2026-02-17 Xudong He , Yu Chen

Passive resonators-systems that exhibit loss but no gain-are foundational elements across nearly every domain of physics and many types of of systems such as subwavelength particles, dielectric slabs, electric circuits, biological…

光学 · 物理学 2025-06-05 Asaf Farhi , Dror Hershkovitz , Haim Suchowski

As a first step in the search of an analytical study of mechanical denaturation of DNA in terms of the sequence, we study stable, stationary solutions in the discrete, finite and homogeneous Peyrard-Bishop DNA model. We find and classify…

其他定量生物学 · 定量生物学 2009-11-11 Sara Cuenda , Angel Sanchez

Conformational change of a DNA molecule is frequently observed in multiple biological processes and has been modelled using a chain of strongly coupled oscillators with a nonlinear bistable potential. While the mechanism and properties of…

生物物理 · 物理学 2020-08-07 Soumyadip Banerjee , Kushal Shah , Shaunak Sen

It is shown that the density of modes of the vibrational spectrum of globular proteins is universal, i.e., regardless of the protein in question it closely follows one universal curve. The present study, including 135 proteins analyzed with…

生物物理 · 物理学 2018-06-29 Hyuntae Na , Guang Song , Daniel ben-Avraham

The translational symmetry of solids gives rise to the existence of low-frequency phonons. In ordered systems, some phonons characterized by different wavevectors are degenerate, i.e. they share the same frequency $\omega$; in finite-size…

统计力学 · 物理学 2018-08-08 Eran Bouchbinder , Edan Lerner

Pendulum-like dynamics is a universal motif across many areas of physics, underlying systems ranging from classical nonlinear oscillators to superconducting qubits and cold-atom tunneling platforms. Here we present an exact frequency-domain…

经典物理 · 物理学 2026-03-12 Teepanis Chachiyo

Causality - the principle stating that the output of a system cannot temporally precede the input - is a universal property of nature. Here, we show that analogous input-output relations can also be realized in the spectral domain by…

光学 · 物理学 2021-08-05 Zeki Hayran , Aobo Chen , Francesco Monticone

We develop an analytical framework for understanding how the generated distribution evolves during diffusion model training. Leveraging a Gaussian-equivalence principle, we solve the full-batch gradient-flow dynamics of linear and…

机器学习 · 计算机科学 2026-04-07 Binxu Wang , Cengiz Pehlevan
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