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Modeling the dynamics of cellular differentiation is fundamental to advancing the understanding and treatment of diseases associated with this process, such as cancer. With the rapid growth of single-cell datasets, this has also become a…

Confining an answer to the question whether and how the coherent operation of network elements is determined by the the network structure is the topic of our work. We map the structure of signal flow in directed networks by analysing the…

数据分析、统计与概率 · 物理学 2011-06-22 M. Bányai , L. Négyessy , F. Bazsó

Let \( G \) be a finite simple undirected graph. Four graph parameters related to network monitoring are the \emph{geodetic set}, \emph{edge geodetic set}, \emph{strong edge geodetic set}, and \emph{monitoring edge geodetic set}, with…

组合数学 · 数学 2026-03-31 Zin Mar Myint , Avikal Srivastava

Given a wireless network where some pairs of communication links interfere with each other, we study sufficient conditions for determining whether a given set of minimum bandwidth quality-of-service (QoS) requirements can be satisfied. We…

信息论 · 计算机科学 2015-12-11 Ashwin Ganesan

Consider a setting where possibly sensitive information sent over a path in a network is visible to every {neighbor} of the path, i.e., every neighbor of some node on the path, thus including the nodes on the path itself. The exposure of a…

数据结构与算法 · 计算机科学 2012-12-27 Shiri Chechik , M. P. Johnson , Merav Parter , David Peleg

Topology recognition and leader election are fundamental tasks in distributed computing in networks. The first of them requires each node to find a labeled isomorphic copy of the network, while the result of the second one consists in a…

分布式、并行与集群计算 · 计算机科学 2021-03-05 Dariusz Dereniowski , Andrzej Pelc

A new family of graphs, {\it entangled networks}, with optimal properties in many respects, is introduced. By definition, their topology is such that optimizes synchronizability for many dynamical processes. These networks are shown to have…

统计力学 · 物理学 2009-11-11 Luca Donetti , Pablo I. Hurtado , Miguel A. Munoz

Coupled cell systems are dynamical systems associated to a network and synchrony subspaces, given by balanced colorings of the network, are invariant subspaces for every coupled cell systems associated to that network. Golubitsky and…

动力系统 · 数学 2017-12-06 Pedro Soares

Phylogenetic networks are mathematical structures for modeling and visualization of reticulation processes in the study of evolution. Galled networks, reticulation visible networks, nearly-stable networks and stable-child networks are the…

种群与进化 · 定量生物学 2015-10-02 Andreas D. M. Gunawan , Louxin Zhang

Single-cell omics enable the profiles of cells, which contain large numbers of biological features, to be quantified. Cluster analysis, a dimensionality reduction process, is used to reduce the dimensions of the data to make it…

基因组学 · 定量生物学 2024-06-06 Okezue Bell , Arthur Lee , Elizabeth Engle

We study tensor networks as a model of arithmetic computation for evaluating multilinear maps. These capture any algorithm based on low border rank tensor decompositions, such as $O(n^{\omega+\epsilon})$ time matrix multiplication, and in…

计算复杂性 · 计算机科学 2018-11-16 Per Austrin , Petteri Kaski , Kaie Kubjas

Decision diagrams for classification have some notable advantages over decision trees, as their internal connections can be determined at training time and their width is not bound to grow exponentially with their depth. Accordingly,…

机器学习 · 计算机科学 2022-05-31 Alexandre M. Florio , Pedro Martins , Maximilian Schiffer , Thiago Serra , Thibaut Vidal

Computing the probability of an edge's existence in a graph network is known as link prediction. While traditional methods calculate the similarity between two given nodes in a static network, recent research has focused on evaluating…

社会与信息网络 · 计算机科学 2023-05-29 Kazi Zainab Khanam , Aditya Singhal , Vijay Mago

We consider node-weighted survivable network design (SNDP) in planar graphs and minor-closed families of graphs. The input consists of a node-weighted undirected graph $G=(V,E)$ and integer connectivity requirements $r(uv)$ for each…

数据结构与算法 · 计算机科学 2019-10-18 Chandra Chekuri , Alina Ene , Ali Vakilian

We study the problem of embedding a guest graph with minimum edge-congestion into a multidimensional grid with the same size as that of the guest graph. Based on a well-known notion of graph separators, we show that an embedding with a…

离散数学 · 计算机科学 2014-03-03 Akira Matsubayashi

Biological processes, including cell differentiation, organism development, and disease progression, can be interpreted as attractors (fixed points or limit cycles) of an underlying networked dynamical system. In this paper, we study the…

系统与控制 · 计算机科学 2017-01-20 Andrew Clark , Phillip Lee , Basel Alomair , Linda Bushnell , Radha Poovendran

We present the OmniMatch algorithm for seeded multiple graph matching. In the setting of $d$-dimensional Random Dot Product Graphs (RDPG), we prove that under mild assumptions, OmniMatch with $s$ seeds asymptotically and efficiently…

机器学习 · 统计学 2025-07-04 Tong Qi , Vera Andersson , Peter Viechnicki , Vince Lyzinski

Motivated by the increasing need to understand the algorithmic foundations of distributed large-scale graph computations, we study a number of fundamental graph problems in a message-passing model for distributed computing where $k \geq 2$…

分布式、并行与集群计算 · 计算机科学 2016-07-07 Gopal Pandurangan , Peter Robinson , Michele Scquizzato

We exhibit a procedure to asymptotically enumerate monotone grid classes of permutations. This is then applied to compute the asymptotic number of permutations in any connected one-corner class. Our strategy consists of enumerating the…

组合数学 · 数学 2025-07-02 Noura Alshammari , David Bevan

This paper gives a fresh look at network synchronization. Here we no longer analyze it from the view of mathematics, such as graph theory, while we probe into one from control theory. First, we analyze the synchronization region using the…

系统与控制 · 电气工程与系统科学 2026-05-05 Jilie Zhang