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Biomaterial systems have allowed for the in vitro production of complex, emergent tissue behaviors that were not possible with conventional 2D culture systems allowing for analysis of the normal development as well as disease processes. We…

组织与器官 · 定量生物学 2019-10-16 Matthew S Hall , Joseph T Decker , Lonnie D Shea

The meniscal tissue is a layered material with varying properties influenced by collagen content and arrangement. Understanding the relationship between structure and properties is crucial for disease management, treatment development, and…

计算工程、金融与科学 · 计算机科学 2023-07-26 J. Waghorne , F. P. Bonomo , A. Rabbani , D. Bell , O. Barrera

A key problem toward the use of microorganisms as bio-factories is reaching and maintaining cellular communities at a desired density and composition so that they can efficiently convert their biomass into useful compounds. Promising…

系统与控制 · 电气工程与系统科学 2023-12-18 Sara Maria Brancato , Davide Salzano , Francesco De Lellis , Davide Fiore , Giovanni Russo , Mario di Bernardo

Bacteria often form surface-bound communities, embedded in a self-produced extracellular matrix, called biofilms. Quantitative studies of their growth have typically focused on unconfined expansion above solid or semi-solid surfaces,…

软凝聚态物质 · 物理学 2022-05-11 George T. Fortune , Nuno M. Oliveira , Raymond E. Goldstein

How systems are endowed with migration capacity is a fascinating question with implications ranging from the design of novel active systems to the control of microbial populations. Bacteria, which can be found in a variety of environments,…

生物物理 · 物理学 2017-07-03 Marc Hennes , Julien Tailleur , Gaëlle Charron , Adrian Daerr

Advances in synthetic biology allow us to engineer bacterial collectives with pre-specified characteristics. However, the behavior of these collectives is difficult to understand, as cellular growth and division as well as extra-cellular…

细胞行为 · 定量生物学 2017-09-13 James J. Winkle , Oleg Igoshin , Matthew R. Bennett , Krešimir Josić , William Ott

Bacteria are prolific at colonizing diverse surfaces under a widerange of environmental conditions, and exhibit fascinating examples of self-organization across scales. Though it has recently attracted considerable interest, the role of…

软凝聚态物质 · 物理学 2024-03-25 M. T. Khan , J. Cammann , A. Sengupta , E. Renzi , M. G. Mazza

Neuronal networks in dissociated culture combined with cell engineering technology offer a pivotal platform to constructively explore the relationship between structure and function in living neuronal networks. Here, we fabricated defined…

神经元与认知 · 定量生物学 2023-01-11 Yuya Sato , Hideaki Yamamoto , Hideyuki Kato , Takashi Tanii , Shigeo Sato , Ayumi Hirano-Iwata

Fungal mycelium, a living network of filamentous threads, thrives on lignocellulosic waste and exhibits rapid growth, hydrophobicity, and intrinsic regeneration, offering a potential means to create next-generation sustainable and…

Colonies of bacteria grown on thin agar plate exhibit fractal patterns as a result of adaptation to their environments. The bacterial colony pattern formation is regulated crucially by chemotaxis, the movement of cells along a chemical…

生物物理 · 物理学 2013-05-24 Waipot Ngamsaad , Kannika Khompurngson

We propose a continuous model for meniscus cartilage regeneration triggered by two populations of cells migrating and (de)differentiating within an artificial scaffold with a known structure. The described biological processes are…

数值分析 · 数学 2023-08-23 Elise Grosjean , Bernd Simeon , Christina Surulescu

The spatial organization of bacteria in dense biofilms is key to their collective behaviour, and understanding it will be important for medical and technological applications. Here we study the morphology of a compact biofilm that undergoes…

生物物理 · 物理学 2019-03-05 Xin Wang , Howard A. Stone , Ramin Golestanian

Bacteria are ubiquitous in our daily lives, either as motile planktonic cells or as immobilized surface-attached biofilms. These different phenotypic states play key roles in agriculture, environment, industry, and medicine; hence, it is…

种群与进化 · 定量生物学 2021-12-07 Jenna A. Ott , Selena Chiu , Daniel B. Amchin , Tapomoy Bhattacharjee , Sujit S. Datta

Information processing in the mammalian brain relies on a careful regulation of the membrane potential dynamics of its constituent neurons, which propagates across the neuronal tissue via electrical signalling. We recently reported the…

神经元与认知 · 定量生物学 2019-02-19 Rosa Martinez-Corral , Jintao Liu , Arthur Prindle , Gurol M. Suel , Jordi Garcia-Ojalvo

We review the computation models for biofilm and bacteria cells, providing perspectives on biofilm's various properties and potential serving as engineering living materials (ELMs), considering the omnipresence of such biological matter.…

生物物理 · 物理学 2022-06-09 Hanfeng Zhai

Angstrom-scale fluidic channels are ubiquitous in nature, and play an important role in regulating cellular traffic, signaling, and responding to stimuli. Synthetic channels are now a reality with the emergence of several cutting-edge…

介观与纳米尺度物理 · 物理学 2022-12-20 Yi You , Abdulghani Ismail , Gwang-Hyeon Nam , Solleti Goutham , Ashok Keerthi , Boya Radha

Microbial consortia offer significant biotechnological advantages over monocultures for bioproduction. However, industrial deployment is hampered by the lack of scalable architectures to ensure stable coexistence between populations.…

系统与控制 · 电气工程与系统科学 2025-11-12 Sara Maria Brancato , Davide Salzano , Davide Fiore , Francesco De Lellis , Giovanni Russo , Mario di Bernardo

Biofilms are complex, self-organized consortia of microorganisms that produce a functional, protective matrix of biomolecules. Physically, the structure of a biofilm can be described as an entangled polymer network which grows and changes…

生物物理 · 物理学 2016-11-08 Marco G. Mazza

Emergence of regular spatial patterns is a hallmark in living matter ranging from subcellular organelles to developing embryos and to ecosystems. Mechanisms for the formation of ordered spatial patterns in biology often require chemical…

生物物理 · 物理学 2024-03-15 Haoran Xu , Yilin Wu

Experiments have recently shown the feasibility of utilising bacteria as micro-scale robotic devices, with special attention paid to the development of bacteria-driven micro-swimmers taking advantage of built-in actuation and sensing…

软凝聚态物质 · 物理学 2019-02-14 Christian Esparza Lopez , Albane Thery , Eric Lauga