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Summary: The Smith Waterman (SW) algorithm, which produces the optimal pairwise alignment between two sequences, is frequently used as a key component of fast heuristic read mapping and variation detection tools, but current implementations…

基因组学 · 定量生物学 2014-03-05 Mengyao Zhao , Wan-Ping Lee , Erik Garrison , Gabor T. Marth

Simultaneous Localization and Mapping (SLAM) algorithms perform visual-inertial estimation via filtering or batch optimization methods. Empirical evidence suggests that filtering algorithms are computationally faster, while optimization…

系统与控制 · 电气工程与系统科学 2022-08-05 Amay Saxena , Chih-Yuan Chiu , Joseph Menke , Ritika Shrivastava , Shankar Sastry

A novel recursive list decoding (RLD) algorithm for Reed-Muller (RM) codes based on successive permutations (SP) of the codeword is presented. A low-complexity SP scheme applied to a subset of the symmetry group of RM codes is first…

信息论 · 计算机科学 2022-09-22 Nghia Doan , Seyyed Ali Hashemi , Marco Mondelli , Warren J. Gross

The Long Short-Term Memory (LSTM) layer is an important advancement in the field of neural networks and machine learning, allowing for effective training and impressive inference performance. LSTM-based neural networks have been…

神经与进化计算 · 计算机科学 2019-01-04 Daniel Kent , Fathi M. Salem

Structured pruning can simplify network architecture and improve inference speed. Combined with the underlying hardware and inference engine in which the final model is deployed, better results can be obtained by using latency collaborative…

计算机视觉与模式识别 · 计算机科学 2023-05-25 Siyuan Pan , Linna Zhang , Jie Zhang , Xiaoshuang Li , Liang Hou , Xiaobing Tu

We present a general framework of designing efficient dynamic approximate algorithms for optimization on undirected graphs. In particular, we develop a technique that, given any problem that admits a certain notion of vertex sparsifiers,…

数据结构与算法 · 计算机科学 2020-05-06 Li Chen , Gramoz Goranci , Monika Henzinger , Richard Peng , Thatchaphol Saranurak

Over the last decade the relative latency of access to shared memory by multicore increased as wire resistance dominated latency and low wire density layout pushed multiport memories farther away from their ports. Various techniques were…

硬件体系结构 · 计算机科学 2021-03-01 Ashish Shrivastava , Alan Gatherer , Tong Sun , Sushma Wokhlu , Alex Chandra

Geometric numerical integration has recently been exploited to design symplectic accelerated optimization algorithms by simulating the Lagrangian and Hamiltonian systems from the variational framework introduced in Wibisono et al. In this…

最优化与控制 · 数学 2023-05-19 Valentin Duruisseaux , Melvin Leok

The Lazy Shortest Path (LazySP) class consists of motion-planning algorithms that only evaluate edges along shortest paths between the source and target. These algorithms were designed to minimize the number of edge evaluations in settings…

机器人学 · 计算机科学 2017-10-12 Nika Haghtalab , Simon Mackenzie , Ariel D. Procaccia , Oren Salzman , Siddhartha S. Srinivasa

As LiDAR sensors have become ubiquitous, the need for an efficient LiDAR data compression algorithm has increased. Modern LiDARs produce gigabytes of scan data per hour and are often used in applications with limited compute, bandwidth, and…

机器人学 · 计算机科学 2023-03-02 Jeff Ford , Jordan Ford

Many machine learning techniques sacrifice convenient computational structures to gain estimation robustness and modeling flexibility. However, by exploring the modeling structures, we find these "sacrifices" do not always require more…

机器学习 · 计算机科学 2019-04-16 Xingguo Li , Haoming Jiang , Jarvis Haupt , Raman Arora , Han Liu , Mingyi Hong , Tuo Zhao

The deployment of Large Language Models is constrained by the memory and bandwidth demands of static weights and dynamic Key-Value cache. SVD-based compression provides a hardware-friendly solution to reduce these costs. However, existing…

计算与语言 · 计算机科学 2026-04-03 Ruoling Qi , Yirui Liu , Xuaner Wu , Xiangyu Wang , Ming Li , Chen Chen , Jian Chen , Yin Chen , Qizhen Weng

We propose the $S$-leaping algorithm for the acceleration of Gillespie's stochastic simulation algorithm that combines the advantages of the two main accelerated methods; the $\tau$-leaping and $R$-leaping algorithms. These algorithms are…

The linear programming (LP) approach has a long history in the theory of approximate dynamic programming. When it comes to computation, however, the LP approach often suffers from poor scalability. In this work, we introduce a relaxed…

系统与控制 · 电气工程与系统科学 2020-12-01 Andrea Martinelli , Matilde Gargiani , John Lygeros

The paper introduces an asymptotically optimal lifelong sampling-based path planning algorithm that combines the merits of lifelong planning algorithms and lazy search algorithms for rapid replanning in dynamic environments where edge…

机器人学 · 计算机科学 2025-07-23 Lu Huang , Jingwen Yu , Jiankun Wang , Xingjian Jing

The iterations of many first-order algorithms, when applied to minimizing common regularized regression functions, often resemble neural network layers with pre-specified weights. This observation has prompted the development of…

机器学习 · 计算机科学 2017-08-03 Hao He , Bo Xin , David Wipf

This paper proposes an accelerated version of Feasible Sequential Linear Programming (FSLP): the AA($d$)-FSLP algorithm. FSLP preserves feasibility in all intermediate iterates by means of an iterative update strategy which is based on…

最优化与控制 · 数学 2024-07-08 David Kiessling , Pieter Pas , Alejandro Astudillo , Panagiotis Patrinos , Jan Swevers

Stochastic gradient descent type methods are ubiquitous in machine learning, but they are only applicable to the optimization of differentiable functions. Proximal algorithms are more general and applicable to nonsmooth functions. We…

最优化与控制 · 数学 2025-05-20 Laurent Condat , Elnur Gasanov , Peter Richtárik

In real-world applications, it is important for machine learning algorithms to be robust against data outliers or corruptions. In this paper, we focus on improving the robustness of a large class of learning algorithms that are formulated…

机器学习 · 计算机科学 2021-06-04 Quanming Yao , Hangsi Yang , En-Liang Hu , James Kwok

In this paper we consider Sparse Fourier Transform (SFT) algorithms for approximately computing the best $s$-term approximation of the Discrete Fourier Transform (DFT) $\mathbf{\hat{f}} \in \mathbb{C}^N$ of any given input vector…

数值分析 · 数学 2017-06-12 Sami Merhi , Ruochuan Zhang , Mark A. Iwen , Andrew Christlieb
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