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Microbial ecosystems are remarkably diverse, stable, and often consist of a balanced mixture of core and peripheral species. Here we propose a conceptual model exhibiting all these emergent properties in quantitative agreement with real…

种群与进化 · 定量生物学 2018-04-18 Akshit Goyal , Sergei Maslov

Ecosystems, which are intricate amalgams of biological communities and their surrounding environments, continually evolve under the influence of their myriad interactions. The world is currently facing intensifying environmental…

生物物理 · 物理学 2023-11-23 Ikumi Kobayashi

In-depth studies of sociotechnical systems are largely limited to single instances. Network surveys are expensive, and platforms vary in important ways, from interface design, to social norms, to historical contingencies. With single…

社会与信息网络 · 计算机科学 2018-11-06 Abigail Z. Jacobs

The random utility model (RUM, McFadden and Richter, 1990) has been the standard tool to describe the behavior of a population of decision makers. RUM assumes that decision makers behave as if they maximize a rational preference over a…

综合经济学 · 经济学 2022-07-05 Victor H. Aguiar , Maria Jose Boccardi , Nail Kashaev , Jeongbin Kim

We present a brief overview of random matrix theory (RMT) with the objectives of highlighting the computational results and applications in financial markets as complex systems. An oft-encountered problem in computational finance is the…

统计金融 · 定量金融 2018-09-27 Hirdesh K. Pharasi , Kiran Sharma , Anirban Chakraborti , Thomas H. Seligman

Random matrix theory successfully connects the structure of interactions of large ecological communities to their ability to respond to perturbations. One of the most debated aspects of this approach is the missing role of population…

种群与进化 · 定量生物学 2018-09-12 Theo Gibbs , Jacopo Grilli , Tim Rogers , Stefano Allesina

Ecological communities with many species can be classified into dynamical phases. In systems with all-to-all interactions, a phase where a fixed point is always reached and a dynamically-fluctuating phase have been found. The dynamics when…

种群与进化 · 定量生物学 2023-08-04 Stav Marcus , Ari M Turner , Guy Bunin

Understanding how biological organisms make decisions is of fundamental importance in understanding behavior. Such an understanding within evolutionary game theory so far has been sought by appealing to bounded rationality. Here, we present…

种群与进化 · 定量生物学 2025-12-16 Mohammad Salahshour

The study of ecological systems is gaining momentum in modern scientific research, driven by an abundance of empirical data and advancements in bioengineering techniques. However, a full understanding of their dynamical and thermodynamical…

种群与进化 · 定量生物学 2025-03-05 Ada Altieri

Evolutionary transitions among ecological interactions are widely known, although their detailed dynamics remain absent for most population models. Adaptive dynamics has been used to illustrate how the parameters of population models might…

种群与进化 · 定量生物学 2022-11-14 Luciano Stucchi , Javier Galeano , Juan Manuel Pastor , José María Iriondo , José A. Cuesta

Dynamics of species' abundances in ecological communities are often described using models that only account for a few species. It is not clear when and why this would be possible, as most species form part of diverse ecological…

种群与进化 · 定量生物学 2024-09-11 Stav Marcus , Guy Bunin

Non-equilibrium thermodynamics has long been an area of substantial interest to ecologists because most fundamental biological processes, such as protein synthesis and respiration, are inherently energy-consuming. Microbial communities are…

种群与进化 · 定量生物学 2022-01-19 Jacob Cook , Samraat Pawar , Robert G. Endres

Empirical evidence suggesting that living systems might operate in the vicinity of critical points, at the borderline between order and disorder, has proliferated in recent years, with examples ranging from spontaneous brain activity to…

Ecological patterns arise from the interplay of many different processes, and yet the emergence of consistent phenomena across a diverse range of ecological systems suggests that many patterns may in part be determined by statistical or…

种群与进化 · 定量生物学 2015-11-16 Xiao Xiao , James P. O'Dwyer , Ethan P. White

In both natural and artificial studies, evolution is often seen as synonymous to natural selection. Individuals evolve under pressures set by environments that are either reset or do not carry over significant changes from previous…

种群与进化 · 定量生物学 2023-05-17 Eleni Nisioti , Clément Moulin-Frier

Community assembly is studied using individual-based multispecies models. The models have stochastic population dynamics with mutation, migration, and extinction of species. Mutants appear as a result of mutation of the resident species,…

种群与进化 · 定量生物学 2010-05-18 Yohsuke Murase , Takashi Shimada , Nobuyasu Ito , Per Arne Rikvold

Interest in the study of in-host microbial communities has increased in recent years due to our improved understanding of the communities' significant role in host health. As a result, the ability to model these communities using…

定量方法 · 定量生物学 2015-09-24 Matthias Chung , Justin Krueger , Mihai Pop

Understanding the forces shaping ecological communities is crucially important to basic science and conservation. In recent years, considerable progress was made in explaining communities using simple and general models, with neutral theory…

种群与进化 · 定量生物学 2014-06-12 Michael Kalyuzhny , Ronen Kadmon , Nadav M. Shnerb

Social relationships can be divided into different classes based on the regularity with which they occur and the similarity among them. Thus, rare and somewhat similar relationships are random and cause noise in a social network, thus…

社会与信息网络 · 计算机科学 2018-10-08 Jeancarlo Campos Leão , Michele Amaral Brandão , Pedro O. S. Vaz de Melo , Alberto H. F. Laender

The Maximum Entropy Theory of Ecology (METE) is a unified theory of biodiversity that predicts a large number of macroecological patterns using only information on the species richness, total abundance, and total metabolic rate of the…

种群与进化 · 定量生物学 2015-01-23 Xiao Xiao , Daniel J. McGlinn , Ethan P. White