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Experiments in superfluid 4He show that at low temperatures, energy dissipation from moving vortices is many orders of magnitude larger than expected from mutual friction. Here we investigate other mechanisms for energy loss by a…

超导电性 · 物理学 2015-03-17 I. H. Neumann , R. J. Zieve

In the present work, the analytical description of an intermolecular vibrational energy transfer, analyzed by two dimensional infrared spectroscopy, is established. The energy transfer process takes place between the dark combination states…

化学物理 · 物理学 2013-09-04 Albert A. Villaeys , Kuo Kan Liang

We present an adequate analytical approach to the description of nonlinear vibration with strong energy exchange between weakly coupled oscillators and oscillatory chains. The fundamental notion of the limiting phase trajectory (LPT)…

斑图形成与孤子 · 物理学 2009-04-01 Leonid I. Manevich , Valeri V. Smirnov

We theoretically examine the effect of the coupling of the transport electrons to a vibrational mode of the molecule on the ac linear-response conductance of molecular junctions. Representing the molecule by a single electronic state, we…

介观与纳米尺度物理 · 物理学 2015-05-27 A. Ueda , O. Entin-Wohlman , A. Aharony

Protein dynamics is a fundamental element to comprehend their biological functions. However, a theoretical picture providing microscopic-detail explanation of its relevant features is still missing. One of the outmost relevant properties…

软凝聚态物质 · 物理学 2023-06-14 Luca Maggi

The rate of non-radiative decay between two molecular electronic states is succinctly described by the energy gap law, which suggests an approximately-exponential dependence of the rate on the electronic energy gap. Here, we inquire whether…

化学物理 · 物理学 2023-04-14 Yong Rui Poh , Sindhana Pannir-Sivajothi , Joel Yuen-Zhou

Proteins are the workhorse molecules of the cell and perform their biological functions by binding to other molecules through physical contact. Protein function is then regulated through coupling of bindings on the protein (allosteric…

生物大分子 · 定量生物学 2025-09-24 Naoto Morikawa

The influence of fast vibrations on energy transfer and conversion in natural molecular aggregates is an issue of central interest. This article shows the important role of high-energy quantized vibrations and their non-equilibrium dynamics…

生物物理 · 物理学 2013-01-30 Avinash Kolli , Edward J. O'Reilly , Gregory D. Scholes , Alexandra Olaya-Castro

To characterize a destruction of Anderson localization by nonlinearity, we study the spreading behavior of initially localized states in disordered, strongly nonlinear lattices. Due to chaotic nonlinear interaction of localized linear or…

混沌动力学 · 物理学 2012-06-12 Mario Mulansky , Karsten Ahnert , Arkady Pikovsky

Biological signaling is imagined as a combination of activation and transport. The former is triggered by local molecular interactions and the latter is the result of molecular diffusion. However, other fundamental physical principles of…

生物物理 · 物理学 2016-12-07 Bernhard Fichtl , Matthias F. Schneider

Waveguides subject to spatiotemporal modulations are known to exhibit nonreciprocal vibration transmission, whereby interchanging the locations of the source and receiver change the end-to-end transmission characteristics. The scenario of…

应用物理 · 物理学 2025-10-20 Jiuda Wu , Behrooz Yousefzadeh

Hybrid ion-atom systems provide an excellent platform for studies of state-resolved quantum chemistry at low temperatures, where quantum effects may be prevalent. Here we study theoretically the process of vibrational relaxation of an…

原子物理 · 物理学 2020-04-01 Krzysztof Jachymski , Florian Meinert

Protein folding processes are generally described statistically with the help of multidimensional free energy landscape, typically reduced to a 1-D free energy profile along good reaction co-ordinate. There are many physical parameters…

生物物理 · 物理学 2017-05-04 Debajyoti De , Anurag Singh , Amar Nath Gupta

A novel mechanism of reaction-induced active molecular motion, not involving any kind of self-propulsion, is proposed and analyzed. Because of the momentum exchange with the surrounding solvent, conformational transitions in…

软凝聚态物质 · 物理学 2023-04-19 Hiroyuki Kitahata , Alexander S. Mikhailov

A theoretical framework is developed to study the dynamics of protein folding. The key insight is that the search for the native protein conformation is influenced by the rate r at which external parameters, such as temperature, chemical…

生物大分子 · 定量生物学 2009-11-13 Gregg Lois , Jerzy Blawzdziewicz , Corey S. O'Hern

A general theoretical framework is developed using free energy functional methods to understand the effects of heterogeneity in the folding of a well-designed protein. Native energetic heterogeneity arising from non-uniformity in native…

无序系统与神经网络 · 物理学 2007-05-23 Steven S. Plotkin , Jose N. Onuchic

The coupling of the charge carriers passing through a molecule bridging two bulky conductors with local vibrational modes of the molecule, gives rise to distinct features in the electronic transport properties on one hand, and to…

介观与纳米尺度物理 · 物理学 2017-02-01 A. Ueda , Y. Utsumi , Y. Tokura , O. Entin-Wohlman , A. Aharony

A protein's function depends critically on its conformational ensemble, a collection of energy weighted structures whose balance depends on temperature and environment. Though recent deep learning (DL) methods have substantially advanced…

生物大分子 · 定量生物学 2026-01-09 Myeongsang Lee , Lauren L. Porter

In this work we investigate the electronic transport along model DNA molecules using an effective tight-binding approach that includes the backbone on site energies. The localization length and participation number are examined as a…

介观与纳米尺度物理 · 物理学 2015-06-11 C. J. Páez , P. A. Schulz

The presence of one or more species at some spatial locations but not others is a central matter in ecology. This phenomenon is related to ecological pattern formation. Nonlocal interactions can be considered as one of the mechanisms…

种群与进化 · 定量生物学 2017-12-29 Ozgur Aydogmus