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Brownian dynamics (BD) simulations are used to study the translocation dynamics of a coarse-grained polymer through a cylindrical nanopore. We consider the case of short polymers, with a polymer length, N, in the range N=21-61. The rate of…

软凝聚态物质 · 物理学 2015-06-18 James M. Polson , Taylor Dunn

We employ Real-Time Time-Dependent Density Functional Theory to study hole oscillations within a B-DNA monomer (one base pair) or dimer (two base pairs). Placing the hole initially at any of the bases which make up a base pair, results in…

生物物理 · 物理学 2018-02-26 M. Tassi , A. Morphis , K. Lambropoulos , C. Simserides

We performed direct calculations of carrier hopping rates in strongly disordered conjugated polymers based on the atomic structure of the system, the corresponding electronic states and their coupling to all phonon modes. We found that the…

无序系统与神经网络 · 物理学 2010-08-03 Nenad~Vukmirović , Lin-Wang Wang

Quantum transport for DNA conduction has widely studied with interest in application as a candidate in making nanowires as well as interest in the scientific mechanism. In this paper, we review recent works with concerning the electronic…

无序系统与神经网络 · 物理学 2015-03-13 Hiroaki Yamada , Kazumoto Iguchi

Two-dimensional monodisperse linear polymer chains are known to adopt for sufficiently large chain lengths $N$ and surface fractions $\phi$ compact configurations with fractal perimeters. We show here by means of Monte Carlo simulations of…

软凝聚态物质 · 物理学 2025-08-04 J. P. Wittmer , A. Cavallo , A. Johner

To identify an analytical relation between the properties of polymers and their's monomer a Metal-Molecule-Metal (MMM) junction has been presented as an interesting and widely used object of research in which the molecule is a polymer which…

介观与纳米尺度物理 · 物理学 2016-08-16 Mohammad Nakhaee , S Ahmad Ketabi

We systematically examine all the tight-binding parameters pertinent to charge transfer along DNA. The $\pi$ molecular structure of the four DNA bases (adenine, thymine, cytosine, and guanine) is investigated by using the linear combination…

生物物理 · 物理学 2010-08-20 L. G. D. Hawke , G. Kalosakas , C. Simserides

We consider two complementary polymer strands of length $L$ attached by a common end monomer. The two strands bind through complementary monomers and at low temperatures form a double stranded conformation (zipping), while at high…

统计力学 · 物理学 2015-03-19 Jean-Charles Walter , Alessandro Ferrantini , Enrico Carlon , Carlo Vanderzande

Motivated by the wide ranging experimental results on the conductivity of DNA, we have investigated extraordinary configurations and chemical environments in which DNA might become a true molecular wire, perticularly from enhanced…

软凝聚态物质 · 物理学 2009-09-29 R. G. Endres , D. L. Cox , R. R. P. Singh

Numerous experiments on charge transfer in DNA yield a contradictory picture of the transfer: on the one hand they suggest that it is a very slow process and the charge is almost completely localized on one Watson-Crick pair, but on the…

生物物理 · 物理学 2013-04-22 V. D. Lakhno , V. B. Sultanov

We report on extended investigation of the thermal transport and acoustical properties on hard carbon samples obtained by pressurization of C60 fullerene. Structural investigations performed by different techniques on the same samples…

无序系统与神经网络 · 物理学 2009-11-07 J. C. Lasjaunias , M. Saint-Paul , A. Bilusic , A. Smontara , S. Gradecak , A. M. Tonejc , A. Tonejc , N. Kitamura

Various charge migration mechanisms in the DNA are studied within the framework of the Peyrard-Bishop-Holstein model which has been widely used to address charge dynamics in this macromolecule. To analyze these mechanisms we consider…

生物物理 · 物理学 2022-09-14 R. P. A. Lima , A. V. Malyshev

We call \textit{monomer} a B-DNA base pair and study, analytically and numerically, electron or hole oscillations in \textit{monomers}, \textit{dimers} and \textit{trimers}. We employ two Tight Binding (TB) approaches: (I) at the base-pair…

We study random copolymers consisted of two kinds of monomers with attraction between similar kinds. The mean field analysis of this system indicates a continuous phase transition into a phase with periodic microdomain structure. It is…

凝聚态物理 · 物理学 2009-10-22 A. M. Gutin , C. D. Sfatos , E. I. Shakhnovich

A model to describe electronic correlations in energy bands is considered. The model is a generalization of the conventional Hubbard model that allows for the fact that the wavefunction for two electrons occupying the same Wannier orbital…

强关联电子 · 物理学 2009-11-07 J. E. Hirsch

The interface between a heavy electron coherent metallic phase and an incoherent normal metal phase is discussed. The Fermi momentum mismatch between the two phases causes the carriers to scatter at the interface. The interface conductance…

强关联电子 · 物理学 2009-11-11 M. A. N. Araujo , A. H. Castro Neto

The nanoscale fluctuation dynamics of semi dilute high molecular weight polymer solutions of Polyethylenoxide (PEO) in D2O under non-equilibrium flow conditions were studied by the neutron spin-echo technique. The sample cell was in…

流体动力学 · 物理学 2011-06-16 Maikel C. Rheinstadter , Rainer Sattler , Wolfgang Haeussler , Christian Wagner

In this paper we present theoretical analysis of the electron transport in conducting polymers. We concentrate on the study of the effects of temperature on characteristics of the transport. We treat a conducting polymers in a metal state…

材料科学 · 物理学 2008-10-23 Natalya A. Zimbovskaya

The kinetic transport of electrons through graphene magnetic barriers is studied theoretically in presence of an external time harmonic scalar potential. The transmission coefficients are calculated in the framework of the non-perturbative…

介观与纳米尺度物理 · 物理学 2017-04-26 R. Biswas , S. Maiti , C. Sinha

Motivated by experiments in which a polynucleotide is driven through a proteinaceous pore by an electric field, we study the diffusive motion of a polymer threaded through a narrow channel with which it may have strong interactions. We show…

生物物理 · 物理学 2009-10-31 David K. Lubensky , David R. Nelson