中文
相关论文

相关论文: Using Molecular Dynamics to Model the Binding Affi…

200 篇论文

We study ionic liquids composed 1-alkyl-3-methylimidazolium cations and bis(trifluoromethyl-sulfonyl)imide anions ([C$_n$MIm][NTf$_2$]) with varying chain-length $n\!=\!2, 4, 6, 8$ by using molecular dynamics simulations. We show that a…

软凝聚态物质 · 物理学 2017-11-13 Benjamin Golub , Jan Neumann , Lisa-Marie Odebrecht , Ralf Ludwig , Dietmar Paschek

We perform the first-principles many-body GW and Bethe-Salpeter equation (BSE) calculations on the two-dimensional hexagonal boron nitride (2D-hBN) to explore the effects of opposite atoms on the electronic structure and linear one-photon…

材料科学 · 物理学 2023-01-04 You-Zhao Lan

Dynamics of adsorption and desorption of (4S)-N on amorphous solid water are analyzed using molecular dynamics simulations. The underlying potential energy surface was provided by machine-learned interatomic potentials. Binding energies…

星系天体物理 · 物理学 2020-09-22 Germán Molpeceres , Viktor Zaverkin , Johannes Kästner

Amorphous boron nitride (\textrm{$\alpha$}-BN) is a promising ultrathin barrier for nanoelectronics, yet the atomistic mechanisms governing its chemical stability remain poorly understood. Here, we investigate the structure-property…

Zinc dialkyldithiophosphate (ZDDP), as the most prominent lubrication additive, forms tribofilms consisting primarily of zinc phosphate glasses containing sulfides. As sulfur is linked to environmental concerns, sulfur-free zinc phosphate…

S-nitrosylation, the covalent addition of NO to the thiol side chain of cysteine, is an important post-transitional modification (PTM) that can affect the function of proteins. As such, PTMs extend and diversify protein functions and thus…

化学物理 · 物理学 2022-09-13 Haydar Taylan Turan , Markus Meuwly

Hybrid organic-inorganic perovskites (HOIP) have emerged in recent years as highly promising semiconducting materials for a wide range of optoelectronic and energy applications. Nevertheless, the rotational dynamics of the organic…

材料科学 · 物理学 2024-10-29 Carlos Escorihuela-Sayalero , Ares Sanuy , Luis Carlos Pardo , Claudio Cazorla

When single-layer h-BN is subjected to a high-energy electron beam, triangular pores with nitrogen edges are formed. Because of the broken sp2 bonds, these pores are known to possess magnetic states. We report on the magnetism and…

材料科学 · 物理学 2022-09-22 Mehmet Dogan , Marvin L. Cohen

Using the semiempirical tight binding method as implemented in the xTB program, we characterized M\"obius boron-nitride and carbon-based nanobelts with different sizes and compared them with normal nanobelts. The calculated properties…

材料科学 · 物理学 2025-09-01 C. Aguiar , N. Dattani , I. Camps

Magnesium (Mg) has mechanical properties similar to bone tissue, and Mg ions take part in the metabolism. This makes Mg of interest for biocompatible degradable body implants, provided that its high corrosion rate can be inhibited. Slightly…

材料科学 · 物理学 2026-01-13 John Bolin , Amanda Goold , Olof Hildeberg , Alva Limbäck , Elsebeth Schröder

In this work, we were able to significantly increase the activity of boron nitride catalysts used for the oxidative dehydrogenation (ODH) of propane by designing and synthesising boron nitride (BN) supported on dendritic fibrous nanosilica…

A simulated annealing (SA) approach is employed in the determination of different tight binding (TB) sets of parameters for the nitride semiconductors AlN, GaN and InN, as well their limitations and potentialities are also discussed. Two…

材料科学 · 物理学 2016-09-21 A. S. Martins , C. E. Fellows

The intermolecular interactions in the title compound are investigated using self-consistent charge density functional based tight binding molecular dynamics. Emphasis is put on the analysis of correlated motions of ion pairs using ideas of…

化学物理 · 物理学 2016-03-22 Tobias Zentel , Oliver Kühn

The interlayer sliding energy landscape of hexagonal boron nitride (h-BN) is investigated via a van der Waals corrected density functional theory approach. It is found that the main role of the van der Waals forces is to "anchor" the layers…

We model monolayer graphene-like materials with BC$_6$N stoichiometry where the bonding between the B and the N atoms plays an important role for their physical and chemical properties. Two types of BC$_6$N are found based on the BN bonds:…

介观与纳米尺度物理 · 物理学 2020-08-26 Nzar Rauf Abdullah , Hunar Omar Rashid , Chi-Shung Tang , Andrei Manolescu , Vidar Gudmundsson

Nuclear binding energies and two-neutron separation energies are analyzed starting from the liquid-drop model and the nuclear shell model in order to describe the global trends of the above observables. We subsequently concentrate on the…

核理论 · 物理学 2009-11-07 R. Fossion , C. De Coster , J. E. Garcia-Ramos , T. Werner , K. Heyde

Physical quilities such as electronic, mechanical, thermal, and optical properties of Al and P codoped silicene forming AlSi$_6$P nanosheets are investigated by first-principle calculations within density functional theory. A particular…

介观与纳米尺度物理 · 物理学 2023-07-18 Nzar Rauf Abdullah , Hunar Omar Rashid , Andrei Manolescu , Vidar Gudmundsson

We present a general-purpose machine learning Gaussian approximation potential (GAP) for iron that is applicable to all bulk crystal structures found experimentally under diverse thermodynamic conditions, as well as surfaces and…

材料科学 · 物理学 2023-06-23 Richard Jana , Miguel A. Caro

Y-doped BaZrO$_3$ is a promising proton conductor for intermediate temperature solid oxide fuel cells. In this work, a combination of static DFT calculations and DFT based molecular dynamics (DFT-MD) was used to study proton conduction in…

We have studied the molecular scale hydrophobicity of an apolar solute, argon, confined between hydrophobic planar surfaces with different confinement widths. Specifically, we find that the hydrophobicity exhibits a non-monotonic behavior…

软凝聚态物质 · 物理学 2015-01-27 Sudip Nepal , Pradeep Kumar
‹ 上一页 1 8 9 10 下一页 ›