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Stochastic models that incorporate birth, death and immigration (also called birth-death and innovation models) are ubiquitous and applicable to many research topics such as quantifying species sizes in ecological populations, describing…

种群与进化 · 定量生物学 2026-05-12 Renaud Dessalles , Maria D'Orsogna , Tom Chou

We consider a general, neutral, dynamical model of biodiversity. Individuals have i.i.d. lifetime durations, which are not necessarily exponentially distributed, and each individual gives birth independently at constant rate \lambda. We…

种群与进化 · 定量生物学 2010-09-02 Amaury Lambert

We construct a continuous state branching process with immigration (CBI) whose immigration depends on the CBI itself and we recover a continuous state branching process (CB). This provides a dual construction of the pruning at nodes of CB…

概率论 · 数学 2009-02-13 Romain Abraham , Jean-Francois Delmas

Fat tailed statistics and power-laws are ubiquitous in many complex systems. Usually the appearance of of a few anomalously successful individuals (bio-species, investors, websites) is interpreted as reflecting some inherent "quality"…

统计力学 · 物理学 2015-05-20 Yosef E. Maruvka , David A. Kessler , Nadav M. Shnerb

We examine birth--death processes with state dependent transition probabilities and at least one absorbing boundary. In evolution, this describes selection acting on two different types in a finite population where reproductive events occur…

种群与进化 · 定量生物学 2010-10-12 Philipp M. Altrock , Chaytanya S. Gokhale , Arne Traulsen

We show that simple stochastic models of genome evolution lead to power law asymptotics of protein domain family size distribution. These models, called Birth, Death and Innovation Models (BDIM), represent a special class of balanced…

基因组学 · 定量生物学 2007-05-23 Georgy P. Karev , Yuri I. Wolf , Eugene V. Koonin

In Part 1, we introduced a stochastic model of an infectious disease, based on the BDI (birth and death with immigration) process. We showed that random processes defined by this model can capture the essence of the stochastic, often…

种群与进化 · 定量生物学 2021-01-28 Hisashi Kobayashi

Migration between different habitats is ubiquitous among biological populations. In this Letter, we study a simple quasispecies model for evolution in two different habitats, with different fitness landscapes, coupled through one-way…

种群与进化 · 定量生物学 2010-12-23 Bartlomiej Waclaw , Rosalind J. Allen , Martin R. Evans

For taxonomic levels higher than species, the abundance distributions of number of subtaxa per taxon tend to approximate power laws, but often show strong deviationns from such a law. Previously, these deviations were attributed to…

生物物理 · 物理学 2009-11-06 Johan Chu , Chris Adami

We study a dynamic model of ecosystems where immigration plays an essential role both in assembling the species community and in mantaining its biodiversity. This framework is particularly relevant for insular ecosystems. Population…

适应与自组织系统 · 物理学 2007-05-23 U. Bastolla , M. Laessig , S. Manrubia , A. Valleriani

A general multi-type population model is considered, where individuals live and reproduce according to their age and type, but also under the influence of the size and composition of the entire population. We describe the dynamics of the…

概率论 · 数学 2019-03-13 Jie Yen Fan , Kais Hamza , Peter Jagers , Fima C. Klebaner

A steady influx of a single deleterious multilocus genotype will impose genetic load on the resident population and leave multiple descendants carrying various numbers of the foreign alleles. Provided that the foreign types are rare at…

种群与进化 · 定量生物学 2015-06-16 Alexey Yanchukov , Stephen R. Proulx

We present some results of simulations of population growth and evolution, using the standard asexual Penna model, with individuals characterized by a string of bits representing a genome containing some possible mutations. After about…

种群与进化 · 定量生物学 2009-11-11 Mikolaj Sitarz , Andrzej Z. Maksymowicz

Maintenance and regeneration of adult tissues rely on the self-renewal of stem cells. Regeneration without over-proliferation requires precise regulation of the stem cell proliferation and differentiation rates. The nature of such…

种群与进化 · 定量生物学 2022-12-19 Rodrigo García-Tejera , Linus Schumacher , Ramon Grima

Despite its radical assumption of ecological equivalence between species, neutral biodiversity theory can often provide good fits to species abundance distributions observed in nature. Major criticisms of neutral theory have focused on…

种群与进化 · 定量生物学 2017-06-28 Rafael D'Andrea , James P. O'Dwyer

A branching process in varying environment with generation-dependent immigration is a modification of the standard branching process in which immigration is allowed and the reproduction and immigration laws may vary over the generations.…

概率论 · 数学 2024-01-31 Miguel González , Goetz Kersting , Carmen Minuesa , Inés del Puerto

We study an immigration effect in the time-changed linear birth-death process where the immigration occurs only if the population goes extinct. We call this process as the time-fractional linear birth-death process with immigration…

概率论 · 数学 2024-11-15 K. K. Kataria , P. Vishwakarma

Population dynamics reflects an underlying birth-death process, where the rates associated with different events may depend on external environmental conditions and on the population density. A whole family of simple and popular…

种群与进化 · 定量生物学 2019-07-03 Yitzhak Yahalom , Bnaya Steinmetz , Nadav M. Shnerb

Why are the epidemic patterns of COVID-19 so different among different cities or countries which are similar in their populations, medical infrastructures, and people's behavior? Why are forecasts or predictions made by so-called experts…

种群与进化 · 定量生物学 2020-06-03 Hisashi Kobayashi

Theoretically, communities at or near their equilibrium species number resist entry of new species. Such 'biotic resistance' recently has been questioned because of successful entry of alien species into diverse natural communities. Data on…

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