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We perform off-lattice, canonical ensemble molecular dynamics simulations of the self-assembly of long segmented copolymers consisting of alternating, tunably attractive and hydrophobic {\em binder} domains, connected by hydrophilic {\em…

软凝聚态物质 · 物理学 2015-07-21 Hamed Mortazavi , Cornelis Storm

Shell effects in the coordinate space can be seen with degenerate Fermi vapors in non-uniform trapping potentials. In particular, below the Fermi temperature, the density profile of a Fermi gas in a confining harmonic potential is…

统计力学 · 物理学 2016-11-23 L. Salasnich , A. Parola , L. Reatto

Membrane-mediated particle interactions depend both on the properties of the particles themselves and the membrane environment in which they are suspended. Experiments have shown that chiral rod-like inclusions dissolved in a colloidal…

The supramolecular assembly of lipids into bilayer membranes is essential for cellular structure and function. However, the impact of lipid structural variations such as acyl chain length, degree of unsaturation, and headgroup type on…

软凝聚态物质 · 物理学 2024-12-13 Sonam Phuntsho

Partially phase-separated liquid-crystal/polymer dispersions display highly fibrillar domain morphologies that are dramatically different from the typical structures found in isotropic mixtures. To explain this, we numerically explore the…

软凝聚态物质 · 物理学 2009-10-31 Amelia M. Lapena , Sharon C. Glotzer , Stephen A. Langer , Andrea J. Liu

Membrane organization is essential for cellular functions such as signal transduction and membrane trafficking. A major challenge is to understand the lateral heterogeneous structures in membranes and membrane fluidity in the presence of…

软凝聚态物质 · 物理学 2007-11-09 Chun-Lai Ren , Yu-qiang Ma

Under appropriate conditions, mixtures of cationic and neutral lipids and DNA in water condense into complexes in which DNA strands form local 2D smectic lattices intercalated between lipid bilayer membranes in a lamellar stack. These…

软凝聚态物质 · 物理学 2009-10-31 L. Golubovic , T. C. Lubensky , C. S. O'Hern

The connection between membrane inhomogeneity and the structural basis of lipid rafts has sparked interest in the lateral organization of model lipid bilayers of two and three components. In an effort to investigate anisotropic lipid…

介观与纳米尺度物理 · 物理学 2010-08-31 Paul Tumaneng , Sagar A. Pandit , Guijun Zhao , H. L. Scott

Aqueous mixtures of small molecules, such as lower n-alkanols for example, are known to be micro-segregated, with domains in the nano-meter range. One consequence of micro-segregated domains would be the existence of long range…

软凝聚态物质 · 物理学 2017-11-22 Aurélien Perera

A molecular model is proposed of a bilayer consisting of fully saturated DPPC and mono unsaturated DOPC. The model not only encompasses the constant density within the hydrophobic core of the bilayer, but also the tendency of chain segments…

生物物理 · 物理学 2009-11-10 R. Elliott , K. Katsov , M. Schick , I. Szleifer

Phase separation within polymer networks plays a central role in shaping the structure and mechanics of both synthetic materials and living cells, including the formation of biomolecular condensates within cytoskeletal networks. Previous…

软凝聚态物质 · 物理学 2025-12-01 Takahiro Yokoyama , Yicheng Qiang , David Zwicker , Arash Nikoubashman

We study the influence of truncating the electrostatic interactions in a fully hydrated pure dipalmitoylphosphatidylcholine (DPPC) bilayer through 20 ns molecular dynamics simulations. The computations in which the electrostatic…

软凝聚态物质 · 物理学 2009-11-07 M. Patra , M. Karttunen , M. Hyvonen , E. Falck , P. Lindqvist , I. Vattulainen

The presence and the properties of lipid bilayer nanometer-scale domains might be important for understanding the membranes of living cells. We used molecular dynamics (MD) simulations to investigate perturbations of a small patch of…

软凝聚态物质 · 物理学 2011-06-01 Frederick A. Heberle , David G. Ackerman , Gerald W. Feigenson

In an effort to understand ``rafts'' in biological membranes, we propose phenomenological models for saturated and unsaturated lipid mixtures, and lipid-cholesterol mixtures. We consider simple couplings between the local composition and…

软凝聚态物质 · 物理学 2009-11-10 Shigeyuki Komura , Hisashi Shirotori , Peter D. Olmsted , David Andelman

Molecular dynamics simulations are performed for a finite non-relativistic system of particles with Lennard-Jones potential. We study the effect of liquid-gas mixed phase on particle number fluctuations in coordinate subspace. A metastable…

Elastic interactions arising from a difference of lattice spacing between two coherent phases can have a strong influence on the phase separation (coarsening) of alloys. If the elastic moduli are different in the two phases, the elastic…

数学物理 · 物理学 2015-06-26 P. Fratzl , O. Penrose , J. L. Lebowitz

Colloidal membranes are monolayer assemblies of rodlike particles that capture the long-wavelength properties of lipid bilayer membranes on the colloidal scale. Recent experiments on colloidal membranes formed by chiral rodlike viruses…

软凝聚态物质 · 物理学 2016-04-01 Sheng Xie , Robert A. Pelcovits , Michael F. Hagan

We have studied the electrostatic screening effect of NaCl solutions on the interactions between anionic lipid bilayers in the fluid lamellar phase using a Poisson-Boltzmann based mean-field approach with constant charge and constant…

软凝聚态物质 · 物理学 2016-12-28 Bing-Sui Lu , Santosh Gupta , Michal Belička , Rudolf Podgornik , Georg Pabst

The determination of potentials of mean force for solute insertion in a membrane by means of all-atom molecular dynamics simulations is often hampered by sampling issues. A multiscale approach to conformational sampling was recently…

化学物理 · 物理学 2017-10-09 Roberto Menichetti , Kurt Kremer , Tristan Bereau

Sterols have been ascribed a major role in the organization of biological membranes, in particular for the formation of liquid ordered domains in complex lipid mixtures. Here, we employed molecular dynamics simulations to compare the…

生物物理 · 物理学 2021-07-13 Azadeh Alavizargar , Fabian Keller , R. Wedlich-Söldner , Andreas Heuer