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Though 1-alkanols are well known to have anesthetic properties, the mode of operation remains enigmatic. We perform extensive atomistic molecular dynamics simulation to study the partitioning of 1- alkanols of different chain-lengths in…

生物物理 · 物理学 2018-06-07 Anirban Polley

The cell membrane is inherently asymmetric and heterogeneous in its composition, a feature that is crucial for its function. Using atomistic molecular dynamics simulations, the physical properties of a 3-component asymmetric mixed lipid…

软凝聚态物质 · 物理学 2012-04-04 Anirban Polley , Satyavani Vemparala , Madan Rao

How do solute concentration and molecular chemistry govern the transition from membrane saturation to destabilization? We address this using microsecond-scale molecular dynamics simulations of dipalmitoylphosphatidylcholine (DPPC) bilayers…

软凝聚态物质 · 物理学 2026-05-12 Anirban Polley

Some anesthetics bind and potentiate gamma-aminobutyric-acid-type receptors, but no universal mechanism for general anesthesia is known. Furthermore, often encountered complications such as anesthesia induced amnesia are not understood.…

细胞行为 · 定量生物学 2020-11-30 Weixiang Jin , Michael Zucker , Arnd Pralle

Although 1-alkanols are widely used as anesthetics and membrane-active agents, the molecular basis of their chain-length-dependent cutoff behavior remains unclear. Here, we perform extensive atomistic molecular dynamics simulations to…

软凝聚态物质 · 物理学 2026-01-27 Anirban Polley

A large and diverse array of small hydrophobic molecules induce general anesthesia. Their efficacy as anesthetics has been shown to correlate both with their affinity for a hydrophobic environment and with their potency in inhibiting…

生物物理 · 物理学 2018-10-17 Ellyn Gray , Joshua Karslake , Benjamin B. Machta , Sarah L. Veatch

Extensive microscopic molecular dynamics simulations have been performed to study the effects of short-chain alcohols, methanol and ethanol, on two different fully hydrated lipid bilayer systems in the fluid phase at 323 K. It is found that…

软凝聚态物质 · 物理学 2007-05-23 Michael Patra , Emppu Salonen , Emma Terama , Roland Faller , Bryan W. Lee , Juha Holopainen , Mikko Karttunen

1-alkanols are well known to have anesthetic and penetration properties, though the mode of operation remains enigmatic. We perform extensive atomistic molecular dynamics simulation to study the penetration of 1-alkanols of different chain…

软凝聚态物质 · 物理学 2025-06-02 Anirban Polley

We report on atomistic simulations of DPPC lipid monolayers using the CHARMM36 lipid force field and four-point OPC water model. The entire two-phase region where domains of the `liquid-condensed' (LC) phase coexist with domains of the…

软凝聚态物质 · 物理学 2019-03-18 S. Panzuela , D. P. Tieleman , L. Mederos , E. Velasco

Diverse molecules induce general anesthesia with potency strongly correlated both with their hydrophobicity and their effects on certain ion channels. We recently observed that several n-alcohol anesthetics inhibit heterogeneity in plasma…

The physicochemical properties of lipid bilayers (membranes) are closely associated with various cellular functions and are often evaluated using absorption and fluorescence spectroscopies. For instance, by employing fluorescent probes that…

Mixtures of lipids and cholesterol are commonly used as model systems for studying the formation of liquid-ordered ($L_o$) domains in heterogeneous biological membranes. The simplest model system exhibiting coexistence between $L_o$ domains…

软凝聚态物质 · 物理学 2021-11-23 Tanmoy Sarkar , Oded Farago

The molecular arrangement of lipids and proteins within biomembranes and monolayers gives rise to complex film morphologies as well as regions of distinct electrical surface potential, topographical and electrostatic nanoscale domains. To…

软凝聚态物质 · 物理学 2016-11-28 Elizabeth Drolle , W. F. D. Bennett , K. Hammond , Edward Lyman , Mikko Karttunen , Zoya Leonenko

A question of considerable interest to cell membrane biology is whether phase segregated domains across an asymmetric bilayer are strongly correlated with each other and whether phase segregation in one leaflet can induce segregation in the…

生物物理 · 物理学 2015-06-17 Anirban Polley , Satyajit Mayor , Madan Rao

We explore the pressure dependence of a set of properties of simple monohydric alcohols, namely of methanol, ethanol and 1-propanol, by using isobaric-isothermal molecular dynamics computer simulations. A recently proposed united atom,…

软凝聚态物质 · 物理学 2026-03-31 M. Aguilar , L. Pusztai , O. Pizio

Liposomes that achieve a heterogeneous and spatially organized surface through phase separation have been recognized to be a promising platform for delivery purposes. However, their design and optimization through experimentation can be…

软凝聚态物质 · 物理学 2021-11-05 Y. Wang , Y. Palzhanov , A. Quaini , M. Olshanskii , S. Majd

Acetaminophen (APAP) or Paracetamol, despite its wide and common use for pain and fever symptoms, shows a variety of side effects, toxic effects, and overdose effects. The most common form of toxic effects of APAP is in the liver where…

We have investigated thermodynamic and dynamic properties as well as the dielectric constant of water-metha\-nol model mixtures in the entire range of composition by using constant pressure molecular dynamics simulations at ambient…

软凝聚态物质 · 物理学 2015-12-25 E. Galicia-Andrés , H. Dominguez , L. Pusztai , O. Pizio

We use a lattice model of a ternary mixture containing saturated and unsaturated lipids with cholesterol (Chol), to study the structural properties characterizing the coexistence between the liquid-disordered and liquid-ordered phases.…

软凝聚态物质 · 物理学 2023-10-24 Tanmoy Sarkar , Oded Farago

Lipid-based drug delivery systems are considered as promising vehicles for hydrophobic drug compounds. Lipid distribution within the droplet can affect drug loading capacity in these carriers. It is extremely challenging to determine the…

计算物理 · 物理学 2019-06-12 Maryam Khalkhali , Sarah Mohammadinejad , Farhad Khoeini , Kobra Rostamizadeh
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