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In this work, we study a model of the chemostat where the species are present in two forms, isolated bacteria and under an aggregated form like attached bacteria or bacteria in flocks. We show that our general model contains a lot of models…

We propose a model of chemostat where the bacterial population is individually-based, each bacterium is explicitly represented and has a mass evolving continuously over time. The substrate concentration is represented as a conventional…

概率论 · 数学 2013-11-08 Fabien Campillo , Coralie Fritsch

We present a model for a biological reactor in which bacteria tend to aggregate in flocs, as encountered in wastewater treatment plants. The influence of this flocculation on the growth dynamics of the bacteria is studied. We argue that a…

种群与进化 · 定量生物学 2007-05-23 Bart Haegeman , Claude Lobry , Jerome Harmand

We study the formation of spot patterns seen in a variety of bacterial species when the bacteria are subjected to oxidative stress due to hazardous byproducts of respiration. Our approach consists of coupling the cell density field to a…

patt-sol · 物理学 2016-09-08 Lev Tsimring , Herbert Levine , Igor Aranson , Eshel Ben-Jacob , Inon Cohen , Ofer Shochet

Micro-organisms aggregate through chemotaxis against a concentration gradient of signals secreted by themselves. We have numerically studied a model consisting of elements with intracellular dynamics, random walks with a state-dependent…

统计力学 · 物理学 2007-10-31 Masayo Inoue , Kunihiko Kaneko

In this paper, we consider a flocculation model in a chemostat where one species is present in two forms: planktonic and aggregated bacteria with the presence of a single resource. The removal rates of isolated and attached bacteria are…

动力系统 · 数学 2023-12-08 Radhouane Fekih-Salem , Tewfik Sari

We investigate the propagating profiles of a degenerate chemotaxis model describing the bacteria chemotaxis and consumption of oxygen by aerobic bacteria, in particular, the effect of the initial attractant distribution on bacterial…

偏微分方程分析 · 数学 2020-05-12 Tianyuan Xu , Shanming Ji , Ming Mei , Jingxue Yin

We introduce two stochastic chemostat models consisting in a coupled population-nutrient process reflecting the interaction between the nutrient and the bacterias in the chemostat with finite volume. The nutrient concentration evolves…

概率论 · 数学 2012-06-19 Pierre Collet , Servet Martinez , Sylvie Meleard , Jaime San Martin

We study the existence and uniqueness of the solution of a non-linear coupled system constituted of a degenerate diffusion-growth-fragmentation equation and a differential equation, resulting from the modeling of bacterial growth in a…

偏微分方程分析 · 数学 2023-03-22 Josué Tchouanti

We consider the classical chemostat model with an additional compartment connected by pure diffusion, and analyze its asymptotic properties. We investigate conditions under which this spatial structure is beneficial for species survival and…

经典分析与常微分方程 · 数学 2017-11-28 María Crespo , Alain Rapaport

The purpose of this paper is to show that it is possible to replace Monod's type model of a chemostat by a constraint based model of bacteria at the genome scale. This new model is an extension of the RBA model of bacteria developed in a…

细胞行为 · 定量生物学 2019-12-04 Marc Dinh , Vincent Fromion

Chemotactic bacteria have been observed to congregate into highly regular patterns. When the bacteria are placed in the center of a dish, a wave of bacteria can travel outward, leaving a regular pattern of spots or stripes in its wake.…

斑图形成与孤子 · 物理学 2009-09-29 William J. Bruno

Bacteria can spontaneously develop collective motions by aligning their motions in dense systems. Here, we show that bacteria can also respond collectively to an alternating electrical field and form dynamic clusters oscillating at the same…

软凝聚态物质 · 物理学 2022-10-11 Mei Mei Bao , Isaiah Eze Igwe , Kang Chen , Tian Hui Zhang

A mathematical model involving a syntrophic relationship between two populations of bacteria in a continuous culture is proposed. A detailed qualitative analysis is carried out. The local and global stability analysis of the equilibria are…

动力系统 · 数学 2011-08-01 Tewfik Sari , Miled El Hajji , Jérôme Harmand

We study the interplay of population growth and evolutionary dynamics using a stochastic model based on birth and death events. In contrast to the common assumption of an independent population size, evolution can be strongly affected by…

种群与进化 · 定量生物学 2012-06-05 Jonas Cremer , Anna Melbinger , Erwin Frey

Lately, experimental research on microbial symbioses based on nutrient exchange and interdependence has yielded a number of interesting findings, however an in-depth mathematical description of the exact underlying dynamics of such…

种群与进化 · 定量生物学 2019-08-08 Matthias M. Fischer

We present a generic mechanism by which reproducing microorganisms, with a diffusivity that depends on the local population density, can form stable patterns. It is known that a decrease of swimming speed with density can promote separation…

种群与进化 · 定量生物学 2010-07-13 M. E. Cates , D. Marenduzzo , I. Pagonabarraga , J. Tailleur

We investigate some chemostat models incorporating wall growth, competition, random fluctuations on the dilution rate, and different consumption functions (Monod and Haldane). We analyze the asymptotic behavior of the solutions of the…

动力系统 · 数学 2026-03-23 Javier López-de-la-Cruz , Felipe Rivero , Carlos R. Takaessu

In the growth of bacterial colonies, a great variety of complex patterns are observed in experiments, depending on external conditions and the bacterial species. Typically, existing models employ systems of reaction-diffusion equations or…

生物物理 · 物理学 2019-11-12 Lautaro Vassallo , David Hansmann , Lidia A. Braunstein

How multicellular life forms evolved out from unicellular ones constitutes a major problem in our understanding of the evolution of our biosphere. A recent set of experiments involving yeast cell populations has shown that selection for…

种群与进化 · 定量生物学 2015-11-10 Salva Duran-Nebreda , Ricard V. Solé
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