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Intracellular biochemical networks fluctuate dynamically due to various internal and external sources of fluctuation. Dissecting the fluctuation into biologically relevant components is important for understanding how a cell controls and…

分子网络 · 定量生物学 2016-02-17 Tetsuya J. Kobayashi , Ryo Yokota , Kazuyuki Aihara

Feedback circuits in biochemical networks which underly cellular signaling pathways are important elements in creating complex behavior. A specific aspect thereof is how stability of equilibrium points depends on model parameters. For…

分子网络 · 定量生物学 2007-11-20 Steffen Waldherr , Frank Allgower

We demonstrate the advantages of feedforward loops using a Boolean network, which is one of the discrete dynamical models for transcriptional regulatory networks. After comparing the dynamical behaviors of network embedded feedback and…

元胞自动机与格子气 · 物理学 2008-02-14 Chikoo Oosawa , Kazuhiro Takemoto , Michael A. Savageau

Many cellular components are present in such low numbers that individual stochastic production and degradation events lead to significant fluctuations in molecular abundances. Although feedback control can, in principle, suppress such…

分子网络 · 定量生物学 2025-12-25 Ryan Ripsman , Brayden Kell , Andreas Hilfinger

Bistable biological regulatory systems need to cope with stochastic noise to fine-tune their function close to bifurcation points. Here, we study stability properties of this regime in generic systems to demonstrate that cooperative…

适应与自组织系统 · 物理学 2025-08-04 Daniele Proverbio , Arthur N. Montanari , Alexander Skupin , Jorge Gonçalves

Feedback loops are essential for regulating cell proliferation and maintaining the delicate balance between cell division and cell death. Thanks to the exact solution of a few simple models of cell growth it is by now clear that stochastic…

种群与进化 · 定量生物学 2023-03-07 Antonio Francesco Zirattu , Marta Biondo , Matteo Osella , Michele Caselle

Superconducting qubits are a promising platform for building a larger-scale quantum processor capable of solving otherwise intractable problems. In order for the processor to reach practical viability, the gate errors need to be further…

The molecular network in an organism consists of transcription/translation regulation, protein-protein interactions/modifications and a metabolic network, together forming a system that allows the cell to respond sensibly to the multiple…

分子网络 · 定量生物学 2007-05-23 Sandeep Krishna , Anna M. C. Andersson , Szabolcs Semsey , Kim Sneppen

Feedback control protocols can stabilize and enhance the operation of quantum devices, however, unavoidable delays in the feedback loop adversely affect their performance. We introduce a quantum control methodology, combining open-loop…

量子物理 · 物理学 2010-03-25 Joshua Combes , Howard M. Wiseman , A. J. Scott

In this work we analyze and bound the effect of modeling errors on the stabilization of pure states or subspaces for quantum stochastic evolutions. Different approaches are used for open-loop and feedback control protocols. For both, we…

量子物理 · 物理学 2024-09-27 Weichao Liang , Kentaro Ohki , Francesco Ticozzi

Feedback uses past detection outcomes to dynamically modify a quantum system and is central to quantum control. These outcomes can be stored in a memory, defined as a stochastic function of past measurements. In this work, we investigate…

量子物理 · 物理学 2025-12-10 Alberto J. B. Rosal , Patrick P. Potts , Gabriel T. Landi

Feedback loops are major components of biochemical systems. Many systems show multiple such (positive or negative) feedback loops. Nevertheless, very few quantitative analyses address the question how such multiple feedback loops evolved.…

定量方法 · 定量生物学 2010-03-08 M. Hafner , H. Koeppl , A. Wagner

To control a quantum system via feedback, we generally have two options in choosing control scheme. One is the coherent feedback, which feeds the output field of the system, through a fully quantum device, back to manipulate the system…

量子物理 · 物理学 2014-11-19 Naoki Yamamoto

A dual-rate control system is a hybrid system composed of continuous-time and discrete-time elements with two sampling frequencies. In this work, a new frequency domain analysis and design approach, based on the Quantitative Feedback Theory…

系统与控制 · 电气工程与系统科学 2020-02-11 Alfonso Baños , Julián Salt , Vicente Casanova

Feedback in cellular processes is typically inferred through cellular responses to experimental perturbations. Modular response analysis provides a theoretical framework for translating specific perturbations into feedback sensitivities…

分子网络 · 定量生物学 2025-05-09 Seshu Iyengar , Andreas Hilfinger

Near a bifurcation point, the response time of a system is expected to diverge due to the phenomenon of critical slowing down. We investigate critical slowing down in well-mixed stochastic models of biochemical feedback by exploiting a…

A key factor that generates significant interest in reset control systems, especially within industrial contexts, is their potential to be designed using a frequency-domain loop-shaping procedure. On the other hand, formulating and…

系统与控制 · 电气工程与系统科学 2025-02-14 S. Ali Hosseini , S. Hassan HosseinNia

The frequency response analysis describes the steady-state responses of a system to sinusoidal inputs at different frequencies, providing control engineers with an effective tool for designing control systems in the frequency domain.…

系统与控制 · 电气工程与系统科学 2024-12-02 Xinxin Zhang , Marcin B Kaczmarek , S. Hassan HosseinNia

Bifurcations leading to complex dynamical behaviour of non-linear systems are often encountered when the characteristics of feedback circuits in the system are varied. In systems with many unknown or varying parameters, it is an…

分子网络 · 定量生物学 2010-09-23 Steffen Waldherr , Frank Allgöwer

Oscillatory chemical reactions often serve as a timing clock of cellular processes in living cells. The temporal dynamics of protein concentration levels is thus of great interest in biology. Here we propose a theoretical framework to…

系统与控制 · 计算机科学 2015-03-20 Yutaka Hori , Shinji Hara
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