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Evolution of a system of diffusing and proliferating mortal reactants is analyzed in the presence of randomly moving catalysts. While the continuum description of the problem predicts reactant extinction as the average growth rate becomes…

软凝聚态物质 · 物理学 2009-10-31 N. M. Shnerb , E. Bettelheim , Y. Louzoun , O. Agam , S. Solomon

We investigate the performance of sparsely-connected networks of integrate-and-fire neurons for ultra-short term information processing. We exploit the fact that the population activity of networks with balanced excitation and inhibition…

神经元与认知 · 定量生物学 2007-05-23 Julien Mayor , Wulfram Gerstner

In complex ecosystems such as microbial communities, there is constant ecological and evolutionary feedback between the residing species and the environment occurring on concurrent timescales. Species respond and adapt to their surroundings…

种群与进化 · 定量生物学 2023-10-17 Jim Wu , David J. Schwab , Trevor GrandPre

Motivation: Stochastic reaction networks are a widespread model to describe biological systems where the presence of noise is relevant, such as in cell regulatory processes. Unfortu-nately, in all but simplest models the resulting discrete…

A stochastic model of excitatory and inhibitory interactions which bears universality traits is introduced and studied. The endogenous component of noise, stemming from finite size corrections, drives robust inter-nodes correlations, that…

无序系统与神经网络 · 物理学 2017-08-16 Clement Zankoc , Duccio Fanelli , Francesco Ginelli , Roberto Livi

Ecological networks such as plant-pollinator systems and food webs vary in space and time. This variability includes fluctuations in global network properties such as total number and intensity of interactions but also in the local…

定量方法 · 定量生物学 2022-12-23 Tancredi Caruso , Giulio Virginio Clemente , Matthias C Rillig , Diego Garlaschelli

We consider a model for systemic risk comprising of a system of diffusion processes, interacting through their empirical mean. Each process is subject to a confining double-well potential with some uncertainty in the coefficients,…

概率论 · 数学 2025-11-06 Alexander Alecio

A variety of physical, social and biological systems generate complex fluctuations with correlations across multiple time scales. In physiologic systems, these long-range correlations are altered with disease and aging. Such correlated…

其他定量生物学 · 定量生物学 2009-11-10 Luis A. N. Amaral , Albert Diaz-Guilera , Andre A. Moreira , Ary L. Goldberger , Lewis A. Lipsitz

Stochastic chemical reaction networks (CRNs) are complex systems which combine the features of concurrent transformation of multiple variables in each elementary reaction event, and nonlinear relations between states and their rates of…

化学物理 · 物理学 2017-12-06 Eric Smith , Supriya Krishnamurthy

The major goal of the present paper is to find out the manifestation of the boundedness of fluctuations. Two different subjects are considered: (i) an ergodic Markovian process associated with a new type of large scaled fluctuations at…

统计力学 · 物理学 2007-05-23 Maria K. Koleva , Valery C. Covachev

Random fluctuations caused by environmental noise can lead to decoherence in quantum systems. Exploring and controlling such dissipative processes is both fundamentally intriguing and essential for harnessing quantum systems to gain…

Many cellular components are present in such low numbers that individual stochastic production and degradation events lead to significant fluctuations in molecular abundances. Although feedback control can, in principle, suppress such…

分子网络 · 定量生物学 2025-12-25 Ryan Ripsman , Brayden Kell , Andreas Hilfinger

Self-organization through noisy interactions is ubiquitous across physics, mathematics, and machine learning, yet how long-range structure emerges from local noisy dynamics remains poorly understood. Here, we investigate three paradigmatic…

软凝聚态物质 · 物理学 2026-03-31 Satyam Anand , Guanming Zhang , Stefano Martiniani

Stochastic resonance is a phenomenon in which noise enhances the response of a system to an input signal. The brain is an example of a system that has to detect and transmit signals in a noisy environment, suggesting that it is a good…

The effect of stochasticity, in the form of Gaussian white noise, in a predator-prey model with two distinct time-scales is presented. A supercritical singular Hopf bifurcation yields a Type II excitability in the deterministic model. We…

动力系统 · 数学 2017-07-20 Susmita Sadhu

Light scattering from resonantly or nearly resonantly excited systems, known as resonance fluorescence, has been gaining importance as a versatile tool for investigating quantum states of matter and readout of quantum information, recently…

量子物理 · 物理学 2023-10-02 Rafał A. Bogaczewicz , Paweł Machnikowski

Biochemical reactions are fundamentally noisy at a molecular scale. This limits the precision of reaction networks, but also allows fluctuation measurements which may reveal the structure and dynamics of the underlying biochemical network.…

生物物理 · 物理学 2018-04-11 Harmen Wierenga , Pieter Rein ten Wolde , Nils B. Becker

A large deviation principle is established for a two-scale stochastic system in which the slow component is a continuous process given by a small noise finite dimensional It\^{o} stochastic differential equation, and the fast component is a…

概率论 · 数学 2017-05-09 Amarjit Budhiraja , Paul Dupuis , Arnab Ganguly

Heterogeneity in gene expression across isogenic cell populations can give rise to phenotypic diversity, even when cells are in homogenous environments. This diversity arises from the discrete, stochastic nature of biochemical reactions,…

定量方法 · 定量生物学 2017-08-31 Zachary Fox , Brian Munsky

The effect of a change of noise amplitudes in overdamped diffusive systems is linked to their unperturbed behavior by means of a nonequilibrium fluctuation-response relation. This formula holds also for systems with state-independent…