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The swimming properties of an E. coli-type model bacterium are investigated by mesoscale hy- drodynamic simulations, combining molecular dynamics simulations of the bacterium with the multiparticle particle collision dynamics method for the…

软凝聚态物质 · 物理学 2016-08-23 Jinglei Hu , Mingcheng Yang , Gerhard Gompper , Roland G. Winkler

Many biological fluids are composed of suspended polymers immersed in a viscous fluid. A prime example is mucus, where the polymers are also known to form a network. While the presence of this microstructure is linked with an overall…

流体动力学 · 物理学 2024-10-10 Adam K. Townsend , Eric E. Keaveny

Topological defects are crucial to the thermodynamics and structure of condensed matter systems. For instance, when incorporated into crystalline membranes like graphene, disclinations with positive and negative topological charge…

软凝聚态物质 · 物理学 2018-08-29 Isaac R. Bruss , Gregory M. Grason

Flagellated bacteria exploiting helical propulsion are known to swim along circular trajectories near surfaces. Fluid dynamics predicts this circular motion to be clockwise (CW) above a rigid surface (when viewed from inside the fluid) and…

生物物理 · 物理学 2014-07-18 Diego Lopez , Eric Lauga

Real-life bacteria often swim in complex fluids, but our understanding of the interactions between bacteria and complex surroundings is still evolving. In this work, rod-like \textit{Bacillus subtilis} swims in a quasi-2D environment with…

The conformations and dynamics of semiflexible filaments subject to a homogeneous external (gravitational) field, e.g., in a centrifuge, are studied numerically and analytically. The competition between hydrodynamic drag and bending…

生物物理 · 物理学 2016-08-23 G. Saggiorato , J. Elgeti , R. G. Winkler , G. Gompper

Motility is fundamental to the survival and proliferation of microorganisms. The E. coli bacterium propels itself using a bundle of rotating helical flagella. If one flagellum reverses its rotational direction, it leaves the bundle,…

软凝聚态物质 · 物理学 2025-04-30 Pierre Martin , Tapan Chandra Adhyapak , Holger Stark

Most bacteria are driven by the cilia or flagella, consisting of a long filament and a rotary molecular motor through a short flexible hook. The beating pattern of these filaments shows synchronization properties from hydrodynamic…

流体动力学 · 物理学 2023-11-23 Weiwei Su , Yuki Izumida , Hiroshi Kori

The ordering of rod-like particles in soft, deformable containers emerges from the interplay of anisotropic interactions, geometric confinement, and boundary compliance. This competition couples internal particle organization to container…

软凝聚态物质 · 物理学 2026-05-22 Stijn van der Ham , André F. V. Matias , Marjolein Dijkstra , Hanumantha Rao Vutukuri

Bundles of filamentous polymers are primary structural components of a broad range of cytoskeletal structures, and their mechanical properties play key roles in cellular functions ranging from locomotion to mechanotransduction and…

软凝聚态物质 · 物理学 2010-02-23 Claus Heussinger , Felix Schueller , Erwin Frey

A growing body of work aims at designing and testing micron-scale synthetic swimmers. One method, inspired by the locomotion of flagellated bacteria, consists of applying a rotating magnetic field to a rigid, helically-shaped, propeller…

流体动力学 · 物理学 2014-02-17 Yi Man , Eric Lauga

Cross-linked filament bundles, such as in cilia and flagella, are ubiquitous in biology. They are considered in textbooks as simple filaments with larger stiffness. Recent observations of flagellar counterbend, however, show that induction…

生物物理 · 物理学 2017-03-14 Rachel Coy , Hermes Gadelha

Eukaryotic flagella are active structures with a complex architecture of microtubules, motor proteins and elastic links. They are capable of whiplike motions driven by motors sliding along filaments that are themselves constrained at an…

软凝聚态物质 · 物理学 2012-11-22 Raghunath Chelakkot , Arvind Gopinath , L. Mahadevan , Michael F. Hagan

Active deformable filaments exhibit a large range of qualitatively different three-dimensional dynamics, depending on their flexibility, the strength and nature of the active forcing, and the surrounding environment. We investigate the…

流体动力学 · 物理学 2025-10-14 Matthew D Butler , Benjamin J Walker , Thomas Montenegro-Johnson , Panayiota Katsamba

We present a hydrodynamic model of spreading epithelial monolayers as polar viscous fluids, with active contractility and traction on the substrate. The combination of both active forces generate an instability that leads to nonlinear…

软凝聚态物质 · 物理学 2017-05-02 C. Blanch-Mercader , J. Casademunt

Buckling induced by viscous flow changes the shape of sheet-like nanomaterial particles suspended in liquids. This instability at the particle scale affects collective behavior of suspension flows and has many technological and biological…

流体动力学 · 物理学 2023-03-10 Hugo Perrin , Heng Li , Lorenzo Botto

We consider a classical elastohydrodynamic model of an inextensible filament undergoing planar motion in $\mathbb{R}^3$. The hydrodynamics are described by resistive force theory, and the fiber elasticity is governed by Euler-Bernoulli beam…

偏微分方程分析 · 数学 2023-02-22 Yoichiro Mori , Laurel Ohm

Hydrodynamic interactions between two identical elastic dumbbells settling under gravity in a viscous fluid at low-Reynolds-number are investigated within the point-particle model. Evolution of a benchmark initial configuration is studied,…

流体动力学 · 物理学 2015-06-23 Marek Bukowicki , Marta Gruca , Maria L. Ekiel-Jezewska

Hydrodynamics and confinement dominate bacterial mobility near solid or air-water boundaries, causing flagellated bacteria to move in circular trajectories. This phenomenon results from the counter-rotation between the bacterial body and…

生物物理 · 物理学 2018-10-09 George Araujo , Weijie Chen , Sridhar Mani , Jay X. Tang

We study experimentally the dynamics of one and two ball-chains settling under gravity in a very viscous fluid at a Reynolds number much smaller than unity. We demonstrate that single ball-chains in most cases do not tend to be planar and…

流体动力学 · 物理学 2023-03-02 H. J. Shashank , Yevgen Melikhov , Maria L. Ekiel-Jezewska