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In addition to the biologically active monomer of the protein Insulin circulating in human blood, the molecule also exists in dimeric and hexameric forms that are used as storage. The Insulin monomer contains two distinct surfaces, namely…

生物大分子 · 定量生物学 2013-12-24 Kushal Bagchi , Susmita Roy

This application paper investigates the stability of hydrogen bonds (H-bonds), as characterized by the Quantum Theory of Atoms in Molecules (QTAIM). First, we contribute a database of 4544 electron densities associated to four isomers of…

机器学习 · 计算机科学 2025-07-17 Thomas Daniel , Malgorzata Olejniczak , Julien Tierny

Multivalent associative proteins with strong complementary interactions play a crucial role in phase separation of intracellular liquid condensates. We study the internal dynamics of such "bond-network" condensates comprised of two…

软凝聚态物质 · 物理学 2022-02-02 Pierre Ronceray , Yaojun Zhang , Xichong Liu , Ned S. Wingreen

Fluid membranes made out of lipid bilayers are the fundamental separation structure in eukaryotic cells. Many physiological processes rely on dramatic shape and topological changes (e.g. fusion, fission) of fluid membrane systems. Fluidity…

数值分析 · 数学 2010-07-29 Marino Arroyo , Antonio DeSimone , Luca Heltai

An accurate description of the structure and dynamics of interfacial water is essential for phospholipid membranes, since it determines their function and their interaction with other molecules. Here we consider water confined in stacked…

软凝聚态物质 · 物理学 2018-11-16 Sotiris Samatas , Carles Calero , Fausto Martelli , Giancarlo Franzese

Liquid water is not only of obvious importance but also extremely intriguing, displaying many anomalies that still challenge our understanding of such an a priori simple system. The same is true when looking at nanoconfined water: The…

软凝聚态物质 · 物理学 2016-06-29 Jon Zubeltzu , Fabiano Corsetti , M. V. Fernandez-Serra , Emilio Artacho

A theoretical treatment based upon the quasi-chemical theory of solutions predicts the most probable number of water neighbors in the inner shell of a Li+ ion in liquid water to be four. The instability of a six water molecule inner sphere…

We investigate the hydrodynamic stability and the formation of patterns in a continuum model of epithelial layers, able to account for the interplay between mechanical activity, lateral adhesion and the $6-$fold orientational order…

软凝聚态物质 · 物理学 2025-02-19 Josep-Maria Armengol-Collado , Leonardo Puggioni , Livio N. Carenza , Luca Giomi

Consider a homogenous fluid membrane, or vesicle, described by the Helfrich-Canham energy, quadratic in the mean curvature. When the membrane is axially symmetric, this energy can be viewed as an `action' describing the motion of a…

软凝聚态物质 · 物理学 2009-11-11 Riccardo Capovilla , Jemal Guven , Efrain Rojas

A cell membrane can be simply regarded as composite material consisting of lipid bilayer, membrane cytoskeleton beneath lipid bilayer, and proteins embedded in lipid bilayer and linked with membrane cytoskeleton if one only concerns its…

其他定量生物学 · 定量生物学 2007-06-26 Z. C. Tu , R. An , Z. C. Ou-Yang

As the beneficial effects of curcumin have often been reported to be limited to its small concentrations, we have undertaken a study to find the aggregation properties of curcumin in water by varying the number of monomers. Our molecular…

生物大分子 · 定量生物学 2015-06-22 Milan Kumar Hazra , Susmita Roy , Biman Bagchi

Computer simulations using atomistic model are carried out to investigate the stability of ternary systems of pure or mixed fatty alcohols, cetrimide, and water. These semi$-$solid oil-in-water systems are used as the main component of…

软凝聚态物质 · 物理学 2020-01-03 Vu Dang Hoang , Hung Huu Tran , Cao Cong Phuong , Hue Minh Thi Nguyen , Toan T. Nguyen

Water hydrating phospholipid membranes determine their stability and function, as well as their interaction with other molecules. In this article we study, using all-atom molecular dynamics simulations, the rotational and translational…

软凝聚态物质 · 物理学 2016-05-25 Carles Calero , H. Eugene Stanley , Giancarlo Franzese

Biological cells use droplets to separate components and spatially control their interior. Experiments demonstrate that the complex, crowded cellular environment affects the droplet arrangement and their sizes. To understand this behavior,…

软凝聚态物质 · 物理学 2021-10-27 Estefania Vidal-Henriquez , David Zwicker

The mechanism of cold- and pressure-denaturation are matter of debate. Some models propose that when denaturation occurs more hydrogen bonds between the molecules of hydration water are formed. Other models identify the cause in the density…

生物物理 · 物理学 2010-11-17 Valentino Bianco , Svilen Iskrov , Giancarlo Franzese

Structure, stability and reactivity of clathrate hydrates with or without hydrogen encapsulation are studied using standard density functional calculations. Conceptual density functional theory based reactivity descriptors and the…

原子与分子团簇 · 物理学 2016-09-28 Pratim Kumar Chattaraj , Sateesh Bandaru , Sukanta Mondal

The need for organisms to regulate their volume and osmolarity when surrounded by freshwater is a basic physical challenge for many bacteria, protists and algae. Taking inspiration from the contractile vacuole complex found in many…

生物物理 · 物理学 2024-09-24 Sami C. Al-Izzi , Matthew S. Turner , Pierre Sens

Polymers contain functional groups that participate in hydrogen bond (H-bond) with water molecules, establishing a robust H-bond network that influences bulk properties. This study utilized molecular dynamics (MD) simulations to examine the…

软凝聚态物质 · 物理学 2023-05-02 Kokoro Shikata , Takuma Kikutsuji , Nobuhiro Yasoshima , Kang Kim , Nobuyuki Matubayasi

Water activity and its relationship with interactions stabilising lamellar stacks of mixed lipid bilayers in their fluid state are investigated by means of osmotic pressure measurements coupled with small-angle x-ray scattering. The…

Water is necessary both for the evolution of life and its continuance. It possesses particular properties that cannot be found in other materials and that are required for life-giving processes. These properties are brought about by the…

软凝聚态物质 · 物理学 2007-06-13 Martin Chaplin
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