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Many bacterial species exchange signaling molecules to coordinate population-wide responses. For this process known as quorum sensing the concentration of the respective molecules is crucial. Here we consider the interaction between…

生物物理 · 物理学 2018-11-14 Vera Bettenworth , Matthew McIntosh , Anke Becker , Bruno Eckhardt

Recent advances in microscopy techniques has uncovered unique aspects of flagella-driven motility in bacteria. A remarkable example is the discovery of flagellar wrapping, a phenomenon whereby a bacterium wraps its flagellum (or flagellar…

软凝聚态物质 · 物理学 2025-04-22 Takuro Kataoka , Taiju Yoneda , Daisuke Nakane , Hirofumi Wada

Bacterial cellulose is an important class of biomaterials which can be grown in well-controlled laboratory and industrial conditions. The cellulose structure is affected by several biological, chemical and environmental factors, including…

生物物理 · 物理学 2021-07-28 Sung-Ha Hong , Jia Yang , Mahdi Davoodianidalik , Horst Punzmann , Michael Shats , Hua Xia

Conjugation accelerates bacterial evolution by enabling bacteria to acquire genes horizontally from their neighbors. Plasmid donors must physically encounter and connect with recipients to allow plasmid transfer, and different environments…

生物物理 · 物理学 2025-08-08 Matti Zbinden , Jana S. Huisman , Natasha Blitvic , Roman Stocker , Jonasz Słomka

We study the growth of a population of bacteria in a dynamical hostile environment corresponding to the immune system of the colonised organism. The immune cells evolve as subcritical open clusters of oriented percolation and are…

种群与进化 · 定量生物学 2013-10-07 Olivier Garet , Régine Marchand

Controlling bacterial surface adhesion and subsequent biofilm formation in fluid systems is crucial for the safety and efficacy of medical and industrial processes. Here, we theoretically examine the transport of bacteria close to surfaces,…

软凝聚态物质 · 物理学 2025-07-08 Edwina F. Yeo , Benjamin J. Walker , Philip Pearce , Mohit P. Dalwadi

Various bacterial strains exhibit colonial branching patterns during growth on poor substrates. These patterns reflect bacterial cooperative self-organization and cybernetic processes of communication, regulation and control employed during…

凝聚态物理 · 物理学 2015-06-25 Ido Golding , Yonathan Kozlovsky , Inon Cohen , Eshel Ben-Jacob

Understanding how bacteria move in porous media is critical to applications in healthcare, agriculture, environmental remediation, and chemical sensing. Recent work has demonstrated that E. coli, which moves by run-and-tumble dynamics in a…

软凝聚态物质 · 物理学 2022-06-07 Tapomoy Bhattacharjee , Sujit S. Datta

Phagocytosis is the process by which cells, which are 5 to 10 times larger than the particle size, engulf particles, holding substantial importance in various biological contexts ranging from the nutrient uptake of unicellular organisms to…

软凝聚态物质 · 物理学 2024-11-20 Partha Sarathi Mondal , Pawan Kumar Mishra , Mitali Thorat , Ananya Verma , Shradha Mishra

Biological systems are promising substrates for computation because they naturally process environmental information through complex internal dynamics. In this study, we investigate whether bacterial metabolic models can act as physical…

新兴技术 · 计算机科学 2026-04-23 Laura Alonso Bartolomé , Jean-Loup Faulon , Xavier Hinaut

A detailed understanding of the interface between living cells and substrate materials is of rising importance in many fields of medicine, biology and biotechnology. Cells at interfaces often form epithelia. The physical barrier that they…

We study a generic model for the polarisation and motility of self-propelled soft objects, biological cells or biomimetic systems, interacting with a viscous substrate. The active forces generated by the cell on the substrate are modelled…

软凝聚态物质 · 物理学 2015-06-23 M. Leoni , P. Sens

Natural bacterial habitats are often complex fluids with viscoelastic and anisotropic responses to stress; for example, they can take the form of liquid crystals (LCs), with elongated microscopic constituents that collectively align while…

In vivo, eukaryotic cells are embedded in a matrix environment, where they grow and develop. Generally, this extracellular matrix (ECM) is an anisotropic fibrous structure, through which macromolecules and biochemical signaling molecules at…

生物物理 · 物理学 2020-01-06 David Gomez , Sari Natan , Yair Shokef , Ayelet Lesman

Social insects are ecologically and evolutionarily most successful organisms on earth, which can achieve robust collective behaviors through local interactions among group members. Colony migration has been considered as a leading example…

动力系统 · 数学 2022-06-15 Lisha Wang , Zhipeng Qiu , Takao Sasaki , Yun Kang

Microbial colonies are experimental model systems for studying the colonization of new territory by biological species through range expansion. We study a generalization of the two-species Eden model, which incorporates local…

生物物理 · 物理学 2015-11-12 Jan-Timm Kuhr , Holger Stark

Cilia and flagella in biological systems often show large scale cooperative behaviors such as the synchronization of their beats in "metachronal waves". These are beautiful examples of emergent dynamics in biology, and are essential for…

软凝聚态物质 · 物理学 2016-04-20 Nicolas Bruot , Pietro Cicuta

The effects of cell size and deformability on the lateral migration and deformation of living cells flowing through a rectangular microchannel has been numerically investigated and compared with the inertial-microfluidics data on detection…

流体动力学 · 物理学 2013-06-21 Hongzhi Lan , Soojung Claire Hur , Dino Di Carlo , Damir B. Khismatullin

Mixed microbial communities, usually composed of various bacterial and fungal species, are fundamental in a plethora of environments, from soil to human gut and skin. Their evolution is a paradigmatic example of intertwined dynamics, where…

种群与进化 · 定量生物学 2022-07-01 Andrea Roli , Stuart A. Kauffman

While modern structural biology has provided us with a rich and diverse picture of membrane proteins, the biological function of membrane proteins is often influenced by the mechanical properties of the surrounding lipid bilayer. Here we…

生物大分子 · 定量生物学 2013-05-27 Christoph A. Haselwandter , Rob Phillips