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We study the genetic interfaces between two species of an expanding colony that consists of individual microorganisms that reproduce and undergo diffusion, both at the frontier and in the interior. Within the bulk of the colony, the genetic…

生物物理 · 物理学 2025-10-28 Jonathan Bauermann , David R. Nelson

We study the interplay of population growth and evolutionary dynamics using a stochastic model based on birth and death events. In contrast to the common assumption of an independent population size, evolution can be strongly affected by…

种群与进化 · 定量生物学 2012-06-05 Jonas Cremer , Anna Melbinger , Erwin Frey

Living organisms, ecosystems, and social systems are examples of complex systems in which robustness against inclusion of new elements is an essential feature. A recently proposed simple model has revealed a general mechanism by which such…

适应与自组织系统 · 物理学 2018-01-24 Fumiko Ogushi , János Kertész , Kimmo Kaski , Takashi Shimada

Bacterial cells navigate around their environment by directing their movement along chemical gradients. This process, known as chemotaxis, can promote the rapid expansion of bacterial populations into previously unoccupied territories.…

种群与进化 · 定量生物学 2022-06-08 Avaneesh V. Narla , Jonas Cremer , Terry Hwa

Unlike coffee and cream that homogenize when stirred, growing micro-organisms (e.g., bacteria, baker's yeast) can actively kill each other and avoid mixing. How do such antagonistic interactions impact the growth and survival of competing…

种群与进化 · 定量生物学 2025-04-01 Jonathan Bauermann , Roberto Benzi , David R. Nelson , Suraj Shankar , Federico Toschi

Interactions between microorganisms and solid boundaries play an important role in biological processes, like egg fertilisation, biofilm formation and soil colonisation, where microswimmers move within a structured environment. Despite…

生物物理 · 物理学 2015-12-23 Matteo Contino , Enkeleida Lushi , Idan Tuval , Vasily Kantsler , Marco Polin

Colonies of rod-shaped bacteria constitute a system of colloidal active matter with nematic properties. As a single initial bacterium multiplies through repeated divisions, the resulting colony quickly loses long-range orientational order,…

Growing tissue and bacterial colonies are active matter systems where cell divisions and cellular motion generate active stress. Although they operate in the non-equilibrium regime, these biological systems can form large-scale ordered…

生物物理 · 物理学 2019-05-28 Yusuf Ilker Yaman , Esin Demir , Roman Vetter , Askin Kocabas

A fundamental issue discussed in evolutionary biology is the transition from unicellular to multicellular organisms. Here we develop non-robust models provided in [1] and attempt to get robust models investigated how differentiation of…

种群与进化 · 定量生物学 2015-12-15 Denis Tverskoy

Bacteria predate plants and animals by billions of years. Today, they are the world's smallest cells yet they represent the bulk of the world's biomass, and the main reservoir of nutrients for higher organisms. Most bacteria can move on…

流体动力学 · 物理学 2016-01-20 Eric Lauga

The formation of bacterial biofilms on solid surfaces within a fluid starts when bacteria attach to the substrate. Understanding environmental factors affecting the attachment and the early stages of the biofilm development as well as the…

应用物理 · 物理学 2019-10-30 Sung-Ha Hong , Jean-Baptiste Gorce , Horst Punzmann , Nicolas Francois , Michael Shats , Hua Xia

The motility of eukaryotic cells is strongly influenced by their environment, with confined cells often developing qualitatively different motility patterns from those migrating on simple two-dimensional substrates. Recent experiments,…

细胞行为 · 定量生物学 2024-12-24 Pedrom Zadeh , Brian A. Camley

An evolving yeast colony is simulated by means of a cellular automaton that takes care of many important features of the system under study. A complete survey of the properties of the colony is done and a set of scaling relations is found,…

统计力学 · 物理学 2007-05-23 Lorenzo Fortunato

The physics of micron-scale biological colonies usually benefits from different out-of-equilibrium sources. In bacterial colonies and cellular tissues, the growth process is among the important active sources that determine the dynamics. In…

软凝聚态物质 · 物理学 2023-06-16 Forouh Maleki , Ali Najafi

Motile bacteria are a wonder of nature's engineering: microscopic engines that transduce biochemical energy into the work they require to explore their environment. This added energy turns the surrounding fluid into a bath that departs from…

软凝聚态物质 · 物理学 2025-04-30 Daniel Grober , Tanumoy Dhar , David Saintillan , Jérémie Palacci

Biofilms are bacterial aggregates that grow on moist surfaces. Thin homogeneous biofilms naturally formed on the walls of conducts may serve as biosensors, providing information on the status of microsystems (MEMS) without disrupting them.…

软凝聚态物质 · 物理学 2024-01-17 Ana Carpio , Baldvin Einarsson , David R. Espeso

Bacterial attachment to a fluid interface can lead to the formation of a film with physicochemical properties that evolve with time. We study the time evolution of interface (micro)mechanics for interfaces between oil and bacterial…

软凝聚态物质 · 物理学 2015-03-26 Liana Vaccari , Daniel Allan , Nima Sharifi-Mood , Aayush Singh , Robert Leheny , Kathleen Stebe

Understanding how growth induces form is a longstanding biological question. Many studies concentrated on the shapes of plant cells, fungi or bacteria. Some others have shown the importance of the mechanical properties of bacterial walls…

生物物理 · 物理学 2007-05-23 Arezki Boudaoud

Microbial populations generally evolve in volatile environments, under conditions fluctuating between harsh and mild, e.g. as the result of sudden changes in toxin concentration or nutrient abundance. Environmental variability thus shapes…

种群与进化 · 定量生物学 2023-12-07 Matthew Asker , Lluís Hernández-Navarro , Alastair M. Rucklidge , Mauro Mobilia

The locomotion of microorganisms and spermatozoa in complex viscoelastic fluids is of critical importance in many biological processes such as fertilization, infection, and biofilm formation. Depending on their propulsion mechanisms,…

软凝聚态物质 · 物理学 2021-09-14 Gaojin Li , Eric Lauga , Arezoo M. Ardekani