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A discrete electrostatic/diffusion model has been developed to describe the selective permeation of ion channels, based on ionic Coulomb blockade (ICB) and quantised dehydration (QD). It has been applied to describe selectivity phenomena…

The conduction and selectivity of calcium/sodium ion channels are described in terms of ionic Coulomb blockade, a phenomenon based on charge discreteness and an electrostatic model of an ion channel. This novel approach provides a unified…

生物物理 · 物理学 2014-05-07 I. Kh. Kaufman , P. V. E. McClintock , R. S. Eisenberg

We use Brownian dynamics simulations to study the permeation properties of a generic electrostatic model of a biological ion channel as a function of the fixed charge $Q_f$ at its selectivity filter. We reconcile the recently-discovered…

生物物理 · 物理学 2013-12-05 I. Kaufman , D. G. Luchinsky , R. Tindjong , P. V. E. McClintock , R. S. Eisenberg

Ionic Coulomb blockade in nanopores is a phenomenon that shares some similarities but also differences with its electronic counterpart. Here, we investigate extensively this phenomenon using all-atom molecular dynamics of ionic transport…

介观与纳米尺度物理 · 物理学 2017-12-27 Hiroya Tanaka , Hideo Iizuka , Yuriy V. Pershin , Massimiliano Di Ventra

Ionic Coulomb blockade (ICB) is an electrostatic phenomenon recently discovered in low-capacitance ion channels/nanopores. Depending on the fixed charge that is present, ICB strongly and selectively influences the ease with which a given…

生物物理 · 物理学 2017-07-31 I. Kh. Kaufman , W. A. T. Gibby , D. G. Luchinsky , P. V. E. McClintock

The anomalous mole fraction effect (AMFE) is widely regarded as a hallmark of calcium versus monovalent ion selectivity in negatively charged pores. While AMFE is well understood in highly cation-selective narrow ion channels, its…

介观与纳米尺度物理 · 物理学 2026-02-24 Eszter Lakics , Mónika Valiskó , Dirk Gillespie , Dezső Boda

Recent advances in nanofluidics have allowed exploration of ion transport down to molecular scale confinement, yet artificial porins are still far from reaching the advanced functionalities of biological ion machinery. Achieving single ion…

软凝聚态物质 · 物理学 2020-05-12 Nikita Kavokine , Sophie Marbach , Alessandro Siria , Lydéric Bocquet

Ionic Coulomb blockade is one of the mesoscopic effects in ion transport revealing the quantized nature of ionic charges, which is of crucial importance to our understanding of the sub-continuum transport in nanofluidics and the mechanism…

介观与纳米尺度物理 · 物理学 2020-12-29 Fanfan Chen , Zonglin Gu , Chunxiao Zhao , Yuang Chen , Xiaowei Jiang , Zhi He , Yuxian Lu , Ruhong Zhou , Jiandong Feng

Ion channels are membrane proteins responsible for an enormous range of biological functions. Ion selectivity and permeation are based on simple laws of physics and chemistry. Ion channels are therefore ideal candidates for physical…

生物物理 · 物理学 2012-06-14 Janhavi Giri

Understanding the dynamics of ions in nanopores is essential for applications ranging from single-molecule detection to DNA sequencing. We show both analytically and by means of molecular dynamics simulations that under specific conditions…

软凝聚态物质 · 物理学 2011-06-08 Matt Krems , Massimiliano Di Ventra

Here we show, combining a simulation and theoretical study, that electrostatic correlations typical of multivalent ions can reverse the selectivity of a biological nanochannel. Our results provide a physical mechanism for a new,…

材料科学 · 物理学 2011-03-03 Marcel Aguilella-Arzo , Carles Calero , Jordi Faraudo

When channels were scaled down to the size of hydrated ions, ionic Coulomb blockade was discovered. However, the experimental CB phenomenon was rarely reported since Feng et.al., discovered in MoS2 nanopore. By using latent-track membranes…

软凝聚态物质 · 物理学 2022-11-18 Yanbo Xie , Deli Shi , Wenhui Wang , Ziheng Wang

Ion transport through charged nanopores is commonly interpreted in terms of electrical double layer structure, leading to the expectation of cation-selective conduction in negatively charged pores. This picture can break down for…

统计力学 · 物理学 2026-04-29 Salman Shabbir , Dezső Boda , Zoltán Ható

We performed all-atom molecular dynamics simulations studying the partition of ions and the ionic current through the bacterial porin OmpF and two selected mutants. The study is motivated by new interesting experimental findings concerning…

材料科学 · 物理学 2015-05-19 Jordi Faraudo , Carles Calero , Marcel Aguilella-Arzo

The effect of fluctuations on the conductivity of ion channels is investigated. It is shown that modulation of the potential barrier at the selectivity site due to electrostatic amplification of charge fluctuations at the channel mouth…

生物物理 · 物理学 2009-11-13 D. G. Luchinsky , R. Tindjong , I. Kaufman , P. V. E. McClintock , R. S. Eisenberg

The transport of fluids at the nanoscale is fundamental to manifold biological and industrial processes, ranging from neurotransmission to ultrafiltration. Yet, it is only recently that well-controlled channels with cross-sections as small…

介观与纳米尺度物理 · 物理学 2022-10-05 Nikita Kavokine , Paul Robin , Lydéric Bocquet

In this work, we examine effects of large permanent charges on ionic flow through ion channels based on a quasi-one dimensional Poisson-Nernst-Planck model. It turns out large positive permanent charges inhibit the flux of cation as…

定量方法 · 定量生物学 2017-12-20 Liwei Zhang , Bob Eisenberg , Weishi Liu

The phase offset between surface charge modulation and geometric undulations in a corrugated nanochannel provides a tunable mechanism for rectified, diode-like ion transport under purely pressure-driven conditions: reversing the applied…

流体动力学 · 物理学 2026-05-15 Thomas Petersen , Pouya Golchin , Jinwoo Im , Felipe P. J. de Barros

We point out that single electron charging effects such as Coulomb Blockade (CB) and high-bias staircases play a crucial role in transport through single ultrashort molecules. A treatment of Coulomb Blockade through a prototypical molecule,…

介观与纳米尺度物理 · 物理学 2009-11-11 Bhaskaran Muralidharan , Avik W Ghosh , Swapan K Pati , Supriyo Datta

Ion transport measurements are widely used as an indirect probe for various properties of confined electrolytes. It is generally assumed that the ion concentration in a nanoscale channel is equal to the ion concentration in the macroscopic…

软凝聚态物质 · 物理学 2023-04-05 Paul Robin , Adrien Delahais , Lydéric Bocquet , Nikita Kavokine
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