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We investigate a mathematical model for a bacterial population in a continuously stirred tank reactor with wall attachment. The model couples a free-boundary value problem for substrate diffusion in the one-dimensional biofilm with a system…

偏微分方程分析 · 数学 2026-03-12 Katerina Nik , Christoph Walker

Microbial ecosystems are commonly modeled by fixed interactions between species in steady exponential growth states. However, microbes often modify their environments so strongly that they are forced out of the exponential state into…

种群与进化 · 定量生物学 2024-01-08 Avaneesh V. Narla , Terence Hwa , Arvind Murugan

Biofilms are complex structures which are inhabited by numerous amount of different species of microorganisms. Due to their ubiquity, they influence human life on an everyday basis. It is therefore important to understand the interactions…

计算工程、金融与科学 · 计算机科学 2025-09-03 Felix Klempt , Hendrik Geisler , Meisam Soleimani , Philipp Junker

We study the interplay of population growth and evolutionary dynamics using a stochastic model based on birth and death events. In contrast to the common assumption of an independent population size, evolution can be strongly affected by…

种群与进化 · 定量生物学 2012-06-05 Jonas Cremer , Anna Melbinger , Erwin Frey

Biofilms are communities of bacteria that exhibit a multitude of multiscale biomechanical behaviors. Recent experimental advances have lead to characterizations of these behaviors in terms of measurements of the viscoelastic moduli of…

细胞行为 · 定量生物学 2017-07-19 Jay A. Stotsky , Vanja Dukic , David M. Bortz

Bacteria often develop distinct phenotypes to adapt to environmental stress. In particular, they can produce biofilms, dense communities of bacteria that live in a complex extracellular matrix. Bacterial biofilms provide a safe haven from…

Biofilms inhabit a range of environments, such as dental plaques or soil micropores, often characterized by intricate, non-even surfaces. However, the impact of surface irregularities on the population dynamics of biofilms remains elusive…

种群与进化 · 定量生物学 2023-08-31 Witold Postek , Klaudia Staskiewicz , Elin Lilja , Bartlomiej Waclaw

The population dynamics and stability of ecosystems of interacting species is studied from the perspective of non-equilibrium thermodynamics by assuming that species, through their biotic and abiotic interactions, are units of entropy…

生物物理 · 物理学 2007-05-23 Karo Michaelian

We model an enclosed system of bacteria, whose motility-induced phase separation is coupled to slow population dynamics. Without noise, the system shows both static phase separation and a limit cycle, in which a rising global population…

统计力学 · 物理学 2017-11-08 Tobias Grafke , Michael E. Cates , Eric Vanden-Eijnden

There is a pressing need to better understand how microbial populations respond to antimicrobial drugs, and to find mechanisms to possibly eradicate antimicrobial-resistant cells. The inactivation of antimicrobials by resistant microbes can…

种群与进化 · 定量生物学 2023-11-16 Lluís Hernández-Navarro , Matthew Asker , Alastair M. Rucklidge , Mauro Mobilia

Microbial ecosystems are remarkably diverse, stable, and often consist of a balanced mixture of core and peripheral species. Here we propose a conceptual model exhibiting all these emergent properties in quantitative agreement with real…

种群与进化 · 定量生物学 2018-04-18 Akshit Goyal , Sergei Maslov

Empirical observations show that ecological communities can have a huge number of coexisting species, also with few or limited number of resources. These ecosystems are characterized by multiple type of interactions, in particular…

种群与进化 · 定量生物学 2018-05-18 Chengyi Tu , Samir Suweis , Jacopo Grillib , Marco Formentin , Amos Maritan

Empirical observations show that ecological communities can have a huge number of coexisting species, also with few or limited number of resources. These ecosystems are characterized by multiple type of interactions, in particular…

种群与进化 · 定量生物学 2018-05-21 Chengyi Tu , Samir Suweis , Jacopo Grilli , Marco Formentin , Amos Maritan

The dynamics of cellular aggregates is driven by the interplay of mechanochemical processes and cellular activity. Although deterministic models may capture mechanical features, local chemical fluctuations trigger random cell responses,…

软凝聚态物质 · 物理学 2024-01-17 Ana Carpio , Elena Cebrian

Pattern formation analysis of eco-epidemiological models with cannibalism and disease has been less explored in the literature. Therefore, motivated by this, we have proposed a diffusive eco-epidemiological model and performed pattern…

偏微分方程分析 · 数学 2021-03-09 Nitu Kumari , Vikas Kumar , Ravi P. Agarwal

Population dynamics is constrained by the environment, which needs to obey certain conditions to support population growth. We consider a standard model for the evolution of a single species population density, that includes reproduction,…

种群与进化 · 定量生物学 2016-10-18 E. H. Colombo , C. Anteneodo

In this work we have investigated the evolutionary dynamics of a generalist pathogen, e.g. a virus population, that evolves towards specialisation in an environment with multiple host types. We have particularly explored under which…

Mathematical modelling of the evolution of the size-spectrum dynamics in aquatic ecosystems was discovered to be a powerful tool to have a deeper insight into impacts of human- and environmental driven changes on the marine ecosystem. In…

偏微分方程分析 · 数学 2024-01-02 Laura Kanzler , Benoit Perthame , Benoit Sarels

In this paper, we proposed a population model depicting the dynamics of a prey species showing group defence against a generalist predator. The group defence characteristic is represented by a non-monotonic functional response. We have…

动力系统 · 数学 2022-09-09 R. R. Patra , S. Maitra , S. Kundu

Microbes are everywhere, including in and on our bodies, and have been shown to play key roles in a variety of prevalent human diseases. Consequently, there has been intense interest in the design of bacteriotherapies or "bugs as drugs,"…

机器学习 · 统计学 2020-04-13 Travis E. Gibson , Georg K. Gerber
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