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The question of biological stability (permanence) of a replicator reaction-diffusion system is considered. Sufficient conditions of biological stability are found. It is proved that there are situations when biologically unstable…

种群与进化 · 定量生物学 2014-06-24 Alexander S. Bratus , Artem S. Novozhilov , Vladimir P. Posvyanskii

We propose a game-theoretic dynamics of a population of replicating individuals. It consists of two parts: the standard replicator one and a migration between two different habitats. We consider symmetric two-player games with two…

种群与进化 · 定量生物学 2007-05-23 Jacek Miekisz , Tadeusz Platkowski

Antimicrobial resistance to drugs (AMR), a global threat to human and animal health, is often regarded as resulting from cooperative behaviour. Moreover, microbes generally evolve in volatile environments that, together with demographic…

种群与进化 · 定量生物学 2024-06-18 Lluís Hernández-Navarro , Matthew Asker , Mauro Mobilia

Current questions in ecology revolve around instabilities in the dynamics on spatial networks and particularly the effect of node heterogeneity. We extend the Master Stability Function formalism to inhomogeneous biregular networks having…

种群与进化 · 定量生物学 2022-04-27 Alexander Krauß , Thilo Gross , Barbara Drossel

Biofilm infections on medical implants are difficult to eradicate because insufficient nutrient availability promotes antibiotic-tolerant persister cells that survive treatment and reseed growth. Existing mathematical models usually omit…

种群与进化 · 定量生物学 2025-09-23 Parna Mandal , Nigel J. Mottram , Sean McGinty

Bacterial biofilms are usually assumed to originate from individual cells deposited on a surface. However, many biofilm-forming bacteria tend to aggregate in the planktonic phase so that it is possible that many natural and infectious…

We study the long-time dynamics in non-Markovian single-population stochastic models, where one or more reactions are modelled as a stochastic process with a fat-tailed non-exponential distribution of waiting times, mimicking long-term…

统计力学 · 物理学 2024-04-05 Ohad Vilk , Michael Assaf

Cooperative behavior, the costly provision of benefits to others, is common across all domains of life. This review article discusses cooperative behavior in the microbial world, mediated by the exchange of extracellular products called…

种群与进化 · 定量生物学 2019-09-26 J. Cremer , A. Melbinger , K. Wienand , T. Henriquez , H. Jung , E. Frey

We propose a compartmental model for epidemiology wherein the population is split into groups with either comply or refuse to comply with protocols designed to slow the spread of a disease. Parallel to the disease spread, we assume that…

动力系统 · 数学 2025-11-27 Christian Parkinson , Weinan Wang

In this study, we investigate the dynamics of a spatial and non spatial prey-predator interaction model that includes the following: (i) fear effect incorporated in prey birth rate; (ii) group defence of prey against predators; and (iii)…

We consider a nonlinear coupled discrete-time model of population dynamics. This model describes the movement of populations within a heterogeneous landscape, where the growth of subpopulations are modelled by (possibly different) bounded…

动力系统 · 数学 2024-05-08 Blake McGrane-Corrigan , Oliver Mason , Rafael de Andrade Moral

When an infectious disease propagates throughout society, the incidence function may rise at first due to an increase in pathogenicity and then decrease due to inhibitory effects until it reaches saturation. Effective vaccination and…

动力系统 · 数学 2023-07-11 Sushil Pathak , G. Shirisha , K. Venkata Ratnam

By generalizing a class of models recently introduced to account for protracted transients in biological systems, we identify a novel mechanism for hyperuniformity. In this model, competition of particles over a shared resource guides the…

统计力学 · 物理学 2025-12-11 Tal Agranov , Natan Wiegenfeld , Omer Karin , Benjamin D. Simons

We are interested in the long time behavior of a two-type density-dependent biological population conditioned to non-extinction, in both cases of competition or weak cooperation between the two species. This population is described by a…

概率论 · 数学 2008-11-04 Patrick Cattiaux , Sylvie Méléard

The evolution and emergence of antibiotic resistance is a major public health concern. The understanding of the within-host microbial dynamics combining mutational processes, horizontal gene transfer and resource consumption, is one of the…

种群与进化 · 定量生物学 2020-03-09 Ramsès Djidjou-Demasse , Samuel Alizon , Mircea T. Sofonea

Collective behavior of bacterial colonies plays critical roles in adaptability, survivability, biofilm expansion and infection. We employ an individual-based model of an interstitial biofilm to study emergent pattern formation based on the…

适应与自组织系统 · 物理学 2017-02-01 Cameron Zachreson , Christian Wolff , Cynthia B. Whitchurch , Milos Toth

One of the aims of systems biology is to build multiple layered and multiple scale models of living systems which can efficiently describe phenomena occurring at various level of resolution. Such models should consist of layers of various…

动力系统 · 数学 2015-03-03 Jacek Banasiak , Aleksandra Falkiewicz , Proscovia Namayanja

We study here the dynamics (and stability) of Probabilistic Population Protocols, via the differential equations approach. We provide a quite general model and we show that it includes the model of Angluin et. al. in the case of very large…

分布式、并行与集群计算 · 计算机科学 2008-07-02 Ioannis Chatzigiannakis , Paul G. Spirakis

Individuals within any species exhibit differences in size, developmental state, or spatial location. These differences coupled with environmental fluctuations in demographic rates can have subtle effects on population persistence and…

种群与进化 · 定量生物学 2015-12-16 Gregory Roth , Sebastian J. Schreiber

How do interactions between species influence their spatial distribution in an ecosystem? To answer this question, we introduce a spatially-extended ecosystem of Generalized Lotka-Volterra type, where species can diffuse and interactions…

统计力学 · 物理学 2025-01-08 Alessandro Salvatore , Fabián Aguirre-López , Ruben Zakine