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相关论文: Dynamics of Active Rouse Chains

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We study the dynamics of a polymer, described as a variant of a Rouse chain, driven by an active terminal monomer (head). The local active force induces a transition from a globule-like to an elongated state, as revealed by the study of the…

统计力学 · 物理学 2020-01-28 Laura Natali , Lorenzo Caprini , Fabio Cecconi

A living cell is an active environment where the organization and dynamics of chromatin are affected by different forms of activity. Optical experiments report that loci show subdiffusive dynamics and the chromatin fiber is seen to be…

软凝聚态物质 · 物理学 2023-03-15 Subhasish Chaki , Ligesh Theeyancheri , Rajarshi Chakrabarti

The Rouse model can be regarded as the standard model to describe the dynamics of a short polymer chain under melt conditions. In this contribution, we explicitly check one of the fundamental assumptions of this model, namely that of a…

软凝聚态物质 · 物理学 2014-10-14 Diddo Diddens , Andreas Heuer

We study the dynamics of an ideal polymer chain in a crowded, viscoelastic medium and in the presence of active forces. The motion of the centre of mass and of individual monomers is calculated. On time scales that are comparable to the…

软凝聚态物质 · 物理学 2015-12-23 Hans Vandebroek , Carlo Vanderzande

We study the dynamics of a polymer that is pulled by a constant force through a viscoelastic medium. This is a model for a polymer being pulled through a cell by an external force, or for an active biopolymer moving due to a self generated…

软凝聚态物质 · 物理学 2015-06-22 Hans Vandebroek , Carlo Vanderzande

Active dynamic processes of cells are largely driven by the cytoskeleton, a complex and adaptable semiflexible polymer network, motorized by mechanoenzymes. Small dimensions, confined geome- tries and hierarchical structures make it…

生物物理 · 物理学 2017-08-23 Jannes Gladrow , Chase P. Broedersz , Christoph F. Schmidt

The cell nucleus houses the chromosomes, which are linked to a soft shell of lamin filaments. Experiments indicate that correlated chromosome dynamics and nuclear shape fluctuations arise from motor activity. To identify the physical…

亚细胞过程 · 定量生物学 2021-04-21 Kuang Liu , Alison E. Patteson , Edward J. Banigan , J. M. Schwarz

Cellular behavior is governed by gene regulatory processes that are intrinsically dynamic and nonlinear, and are subject to non-negligible amounts of random fluctuations. Such conditions are ubiquitous in physical systems, where they have…

分子网络 · 定量生物学 2011-09-21 Jordi Garcia-Ojalvo

The dynamics of ring polymer melts are studied via molecular dynamics simulations of the Kremer-Grest bead-spring model. Rouse mode analysis is performed in comparison with linear polymers by changing the chain length. Rouse-like behavior…

软凝聚态物质 · 物理学 2021-09-23 Shota Goto , Kang Kim , Nobuyuki Matubayasi

The some dynamic properties of a random heteropolymer in the condensed state are studied in the mode coupling approximation. In agreement with recent report a dynamic friction increasing is predicted for the random heteropolymer with…

无序系统与神经网络 · 物理学 2007-05-23 E. Sh. Mamasakhlisov , V. F. Morozov

We use Langevin dynamics simulations to study dynamical behaviour of a dense planar layer of active semi-flexible filaments. Using the strength of active force and the thermal persistence length as parameters, we map a detailed phase…

软凝聚态物质 · 物理学 2018-02-21 K. R. Prathyusha , Silke Henkes , Rastko Sknepnek

Active particles driven by colored noise can be approximately mapped onto a system that obeys detailed balance. The effective interactions which can be derived for such a system allow to describe the structure and phase behavior of the…

软凝聚态物质 · 物理学 2017-11-30 René Wittmann , Umberto Marini Bettolo Marconi , Claudio Maggi , Joseph M. Brader

We theoretically study the conformational and dynamical properties of semiflexible active polar ring polymers under linear shear flow. A ring is described as a continuous Gaussian polymer with a tangential active force of a constant density…

软凝聚态物质 · 物理学 2024-07-04 Roland G. Winkler , Sunil P. Singh

In addition to thermal noise, which is essential to promote conformational transitions in biopolymers, cellular environment is replete with a spectrum of athermal fluctuations that are produced from a plethora of active processes. To…

生物物理 · 物理学 2015-06-11 Won Kyu Kim , Changbong Hyeon , Wokyung Sung

We address the general question of how the molecular weight dependence of chain dynamics in unentangled polymers is modified by blending. By dielectric spectroscopy we measure the normal mode relaxation of polyisoprene in blends with a slow…

软凝聚态物质 · 物理学 2012-02-24 Silvia Arrese-Igor , Angel Alegria , Angel J. Moreno , Juan Colmenero

We study the dynamics of the passage of a polymer through a membrane pore (translocation), focusing on the scaling properties with the number of monomers $N$. The natural coordinate for translocation is the number of monomers on one side of…

软凝聚态物质 · 物理学 2009-11-07 Jeffrey Chuang , Yacov Kantor , Mehran Kardar

We investigated the static and dynamic properties of a Rouse ring polymer modified by introducing an effective, spherically symmetric, attractive potential of entropic nature and a memory function describing the effect of dynamic…

软凝聚态物质 · 物理学 2026-05-27 Nail Fatkullin , Carlos Mattea , Kevin Lindt , Siegfried Stapf , Margarita Kruteva

A prime example of non-equilibrium or active environment is a biological cell. In order to understand in-vivo functioning of biomolecules such as proteins, chromatins, a description beyond equilibrium is absolutely necessary. In this…

软凝聚态物质 · 物理学 2019-03-27 Subhasish Chaki , Rajarshi Chakrabarti

We show the presence of both a minimum and clear oscillations in the frequency dependence of the translocation time of a polymer described as a unidimensional Rouse chain driven by a spatially localized oscillating linear potential. The…

软凝聚态物质 · 物理学 2010-09-16 Alessandro Fiasconaro , Juan José Mazo , Fernando Falo

We study the dynamics of a tagged monomer of a Rouse polymer for different initial configurations. In the case of free evolution, the monomer displays subdiffusive behavior with strong memory of the initial state. In presence of either…

统计力学 · 物理学 2013-12-03 Shamik Gupta , Alberto Rosso , Christophe Texier