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Most humans have the good fortune to live their lives embedded in richly structured social groups. Yet, it remains unclear how humans acquire knowledge about these social structures to successfully navigate social relationships. Here we…

神经元与认知 · 定量生物学 2019-04-23 Steven H. Tompson , Ari E. Kahn , Emily B. Falk , Jean M. Vettel , Danielle S. Bassett

Topological structures in image data, such as connected components and loops, play a crucial role in understanding image content (e.g., biomedical objects). % Despite remarkable successes of numerous image processing methods that rely on…

计算机视觉与模式识别 · 计算机科学 2025-08-05 Pengfei Gu , Hongxiao Wang , Yejia Zhang , Huimin Li , Chaoli Wang , Danny Chen

Networks (or graphs) appear as dominant structures in diverse domains, including sociology, biology, neuroscience and computer science. In most of the aforementioned cases graphs are directed - in the sense that there is directionality on…

社会与信息网络 · 计算机科学 2015-06-16 Fragkiskos D. Malliaros , Michalis Vazirgiannis

Recent experimental advances are producing an avalanche of data on both neural connectivity and neural activity. To take full advantage of these two emerging datasets we need a framework that links them, revealing how collective neural…

神经元与认知 · 定量生物学 2020-02-27 Gabriel Koch Ocker , Krešimir Josić , Eric Shea-Brown , Michael A. Buice

This paper extends the possibility to examine the underlying curvature of data through the lens of topology by using the Betti curves, tools of Persistent Homology, as key topological descriptors, building on the clique topology approach.…

代数拓扑 · 数学 2024-06-25 Luigi Caputi , Anna Pidnebesna , Jaroslav Hlinka

Graph clustering is a fundamental problem that has been extensively studied both in theory and practice. The problem has been defined in several ways in literature and most of them have been proven to be NP-Hard. Due to their high practical…

社会与信息网络 · 计算机科学 2012-03-27 Sumit Singh

We propose a framework for constructing combinatorial complexes (CCs) from fMRI time series data that captures both pairwise and higher-order neural interactions through information-theoretic measures, bridging topological deep learning and…

神经元与认知 · 定量生物学 2026-01-06 Valentina Sánchez , Çiçek Güven , Koen Haak , Theodore Papamarkou , Gonzalo Nápoles , Marie Šafář Postma

Lattice structures play a central role in spectral graph theory, offering analytical insight into diffusion, synchronization, and transport processes on regular discrete spaces. While their spectral properties are completely characterized…

组合数学 · 数学 2025-11-17 Eleonora Andreotti

Role discovery is the task of dividing the set of nodes on a graph into classes of structurally similar roles. Modern strategies for role discovery typically rely on graph embedding techniques, which are capable of recognising complex local…

社会与信息网络 · 计算机科学 2022-06-08 Eoghan Cunningham , Derek Greene

Many large, real-world complex networks have rich community structure that a network scientist seeks to understand. These communities may overlap or have intricate internal structure. Extracting communities with particular topological…

社会与信息网络 · 计算机科学 2016-09-20 Christine Klymko , Geoffrey Sanders

A graph is locally chordal if each of its small-radius balls is chordal. In an earlier work [AKK25], the authors and Kobler proved that locally chordal graphs can be characterized by having chordal local covers, by forbidding short cycles…

组合数学 · 数学 2025-12-23 Tara Abrishami , Paul Knappe

The discovery and analysis of network patterns are central to the scientific enterprise. In the present work, we developed and evaluated a new approach that learns the building blocks of graphs that can be used to understand and generate…

社会与信息网络 · 计算机科学 2018-02-26 Salvador Aguinaga , David Chiang , Tim Weninger

Identifying cerebral cortex layers is crucial for comparative studies of the cytoarchitecture aiming at providing insights into the relations between brain structure and function across species. The absence of extensive annotated datasets…

计算机视觉与模式识别 · 计算机科学 2023-11-28 Valentina Vadori , Antonella Peruffo , Jean-Marie Graïc , Giulia Vadori , Livio Finos , Enrico Grisan

Hippocampal neurons track positions of self, others, and gaze direction. However, it is unclear how their respective neural codes differ enough to avoid confusion while allowing for abstraction. We recorded from populations of hippocampal…

This paper proposes a novel topological learning framework that integrates networks of different sizes and topology through persistent homology. Such challenging task is made possible through the introduction of a computationally efficient…

神经元与认知 · 定量生物学 2023-01-30 Tananun Songdechakraiwut , Moo K. Chung

Despite significant advances in the field of deep learning in applications to various fields, explaining the inner processes of deep learning models remains an important and open question. The purpose of this article is to describe and…

机器学习 · 计算机科学 2022-04-20 German Magai , Anton Ayzenberg

We propose a mid-level image segmentation framework that combines multiple figure-ground hypothesis (FG) constrained at different locations and scales, into interpretations that tile the entire image. The problem is cast as optimization…

计算机视觉与模式识别 · 计算机科学 2010-09-27 Joao Carreira , Adrian Ion , Cristian Sminchisescu

Unsupervised node clustering (or community detection) is a classical graph learning task. In this paper, we study algorithms, which exploit the geometry of the graph to identify densely connected substructures, which form clusters or…

社会与信息网络 · 计算机科学 2023-07-20 Yu Tian , Zachary Lubberts , Melanie Weber

Central Pattern Generators (CPGs) in invertebrates are comprised of networks of neurons in which every neuron has reciprocal connections to other members of the CPG. This is a ``closed'' network topology. An ``open'' topology, where one or…

chao-dyn · 物理学 2007-05-23 R. Huerta , P. Varona , M. I. Rabinovich , Henry D. I. Abarbanel

Studies of the dynamics of nonlinear recurrent neural networks often assume independent and identically distributed couplings, but large-scale connectomics data indicate that biological neural circuits exhibit markedly different…

神经元与认知 · 定量生物学 2025-10-28 David G. Clark , Owen Marschall , Alexander van Meegen , Ashok Litwin-Kumar