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Water and water-mediated interactions determine thermodynamic and kinetics of protein folding, protein aggregation and self-assembly in confined spaces. To obtain insights into the role of water in the context of folding problems, we…

软凝聚态物质 · 物理学 2015-05-28 S. Vaitheeswaran , Jie Chen , D. Thirumalai

Water mediates electrostatic interactions via the orientation of its dipoles around ions, molecules, and interfaces. This induced water polarization consequently influences multiple phenomena. In particular, water polarization modulated by…

The aversion of hydrophobic solutes for water drives diverse interactions and assemblies across materials science, biology and beyond. % Here, we review the theoretical, computational and experimental developments which underpin a…

软凝聚态物质 · 物理学 2022-10-05 Nicholas B. Rego , Amish J. Patel

Hydrophobic solid-water interfaces underpin processes in nanofluidics, electrochemistry, and energy technologies. Microscopic insights into these systems are often inferred from our understanding of the air-water interface, which is assumed…

The results of molecular dynamics simulations of the properties of water in an aqueous ionic solution close to an interface with a model metallic electrode are described. In the simulations the electrode behaves as an ideally polarizable…

统计力学 · 物理学 2014-09-09 Adam P. Willard , Stewart K. Reed , Paul A. Madden , David Chandler

We investigate the solvation of methane and methane decorated with charges in spherically confined water droplets. Free energy profiles for a single methane molecule in droplets, ranging in diameter D, from 1 to 4 nm, show that the droplet…

化学物理 · 物理学 2009-09-29 S. Vaitheeswaran , D. Thirumalai

A theoretical model for the effect of water hydrogen bonding on the thermodynamics of hydrophobic hydration is proposed as a combination of the classical density functional theory with the recently developed probabilistic approach to water…

统计力学 · 物理学 2011-06-16 Yuri S. Djikaev

We have used molecular simulation and methods of importance sampling to study the thermodynamics and kinetics of ionic charge separation at a liquid water-metal interface. We have considered this process using canonical examples of two…

化学物理 · 物理学 2022-06-08 John A. Kattirtzi , David T. Limmer , Adam P. Willard

In aqueous solutions, dissolved ions interact strongly with the surrounding water, thereby modifying the solution properties in an ion-specific manner. These ion-hydration interactions can be accounted for theoretically on a mean-field…

软凝聚态物质 · 物理学 2014-04-22 Dan Ben-Yaakov , David Andelman , Rudi Podgornik , Daniel Harries

We use Metropolis Monte Carlo and umbrella sampling to calculate the free energies of interaction of two methane molecules and their charged derivatives in cylindrical water-filled pores. Confinement strongly alters the interactions between…

软凝聚态物质 · 物理学 2009-11-13 S. Vaitheeswaran , G. Reddy , D. Thirumalai

We calculate the ion distributions around an interface in fluid mixtures of highly polar and less polar fluids (water and oil) for two and three ion species. We take into account the solvation and image interactions between ions and…

软凝聚态物质 · 物理学 2009-11-13 Akira Onuki

The strength of hydrogen bonding in water is stronger than that of van der waals interaction, therefore water may play an important role in the process of hydrophobic effects. When a hydrophobic solute is dissolved into water, an interface…

化学物理 · 物理学 2017-03-08 Qiang Sun

Correlated anion and cation motion can significantly reduce the overall ion conductivity in electrolytes versus the ideal conductivity calculated based on the diffusion constants alone. Using coarse-grained molecular dynamics simulations,…

软凝聚态物质 · 物理学 2020-06-01 Kuan-Hsuan Shen , Lisa M. Hall

Interfaces are a most common motif in complex systems. To understand how the presence of interfaces affect hydrophobic phenomena, we use molecular simulations and theory to study hydration of solutes at interfaces. The solutes range in size…

软凝聚态物质 · 物理学 2014-09-05 Amish J. Patel , Patrick Varilly , Sumanth N. Jamadagni , Hari Acharya , Shekhar Garde , David Chandler

A hydrophobic constriction site can act as an efficient barrier to ion and water permeation if its diameter is less than the diameter of an ion's first hydration shell. This hydrophobic gating mechanism is thought to operate in a number of…

亚细胞过程 · 定量生物学 2007-05-23 Oliver Beckstein , Mark S. P. Sansom

Water plays a key role in biological membrane transport. In ion channels and water-conducting pores (aquaporins), one dimensional confinement in conjunction with strong surface effects changes the physical behavior of water. In molecular…

生物物理 · 物理学 2019-07-02 Oliver Beckstein , Mark S. P. Sansom

Solvent plays an important role in the relative motion of nanoscopic bodies, and the study of such phenomena can help elucidate the mechanism of hydrophobic assembly, as well as the influence of solvent-mediated effects on in vivo motion in…

统计力学 · 物理学 2011-12-12 Joseph A. Morrone , Jingyuan Li , B. J. Berne

Ion distribution in aqueous electrolytes near the interface plays critical roles in electrochemical, biological and colloidal systems and is expected to be particularly significant inside nanoconfined regions. Electroneutrality of the total…

软凝聚态物质 · 物理学 2015-03-03 Zhi-Xiang Luo , Yun-Zhao Xing , Yan-Chun Ling , Alfred Kleinhammes , Yue Wu

Within the quasichemical approach, the hydration free energy of an ion is decomposed into a chemical term accounting for ion specific ion-water interactions within the coordination sphere and nonspecific contributions accounting for packing…

生物物理 · 物理学 2011-06-03 Safir Merchant , D. Asthagiri

Ion transport within confined environments, like nanopores and nanotubes, is pivotal for advancing a range of applications, including biosensors, seawater desalination, and energy storage devices. Existing research does not sufficiently…

介观与纳米尺度物理 · 物理学 2023-12-01 Zhenyu Wei , Yunfei Chen
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