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The statistical analysis of group studies in neuroscience is particularly challenging due to the complex spatio-temporal nature of the data, its multiple levels and the inter-individual variability in brain responses. In this respect,…

统计方法学 · 统计学 2025-05-15 Nicolò Margaritella , Vanda Inácio , Ruth King

Regression models are used in a wide range of applications providing a powerful scientific tool for researchers from different fields. Linear, or simple parametric, models are often not sufficient to describe complex relationships between…

机器学习 · 统计学 2021-11-24 Aliaksandr Hubin , Geir Storvik , Florian Frommlet

Naturalistic fMRI has been suggested to be a powerful alternative for investigations of human brain function. Stimulus-induced activation has been playing an essential role in fMRI-based brain function analyses. Due to the complexity of the…

神经元与认知 · 定量生物学 2022-12-06 Jiangcong Liu , Hao Ma , Yun Guan , Fan Wu , Le Xu , Yang Zhang , Lixia Tian

Decoding visual stimuli from neural population activity is crucial for understanding the brain and for applications in brain-machine interfaces. However, such biological data is often scarce, particularly in primates or humans, where…

机器学习 · 计算机科学 2025-10-24 Jan Sobotka , Luca Baroni , Ján Antolík

The neural coding is yet to be discovered. The neuronal operational modes that arise with fixed inputs but with varying degrees of stimulation help to elucidate their coding properties. In neurons receiving {\it in vivo} stimulation, we…

神经元与认知 · 定量生物学 2025-11-05 Lindsey Knowles , Cesar Ceballos , Rodrigo Pena

Correlations in sensory neural networks have both extrinsic and intrinsic origins. Extrinsic or stimulus correlations arise from shared inputs to the network, and thus depend strongly on the stimulus ensemble. Intrinsic or noise…

神经元与认知 · 定量生物学 2018-11-05 Ulisse Ferrari , Stephane Deny , Matthew Chalk , Gasper Tkacik , Olivier Marre , Thierry Mora

The seemingly stochastic transient dynamics of neocortical circuits observed in vivo have been hypothesized to represent a signature of ongoing stochastic inference. In vitro neurons, on the other hand, exhibit a highly deterministic…

神经元与认知 · 定量生物学 2017-03-14 Mihai A. Petrovici , Johannes Bill , Ilja Bytschok , Johannes Schemmel , Karlheinz Meier

The relationship between a neuron's complex inputs and its spiking output defines the neuron's coding strategy. This is frequently and effectively modeled phenomenologically by one or more linear filters that extract the components of the…

神经元与认知 · 定量生物学 2011-11-02 Michael Famulare , Adrienne L. Fairhall

Neural decoding, the process of understanding how brain activity corresponds to different stimuli, has been a primary objective in cognitive sciences. Over the past three decades, advances in functional Magnetic Resonance Imaging (fMRI) and…

计算机视觉与模式识别 · 计算机科学 2026-01-28 Yanchen Wang , Adam Turnbull , Tiange Xiang , Yunlong Xu , Sa Zhou , Adnan Masoud , Shekoofeh Azizi , Feng Vankee Lin , Ehsan Adeli

Recent advancements in miniaturized fluorescence microscopy have made it possible to investigate neuronal responses to external stimuli in awake behaving animals through the analysis of intra-cellular calcium signals. An on-going challenge…

应用统计 · 统计学 2022-01-28 Laura D'Angelo , Antonio Canale , Zhaoxia Yu , Michele Guindani

In many real-world scenarios where data is high dimensional, test time acquisition of features is a non-trivial task due to costs associated with feature acquisition and evaluating feature value. The need for highly confident models with an…

机器学习 · 计算机科学 2019-09-17 Orpaz Goldstein , Mohammad Kachuee , Kimmo Karkkainen , Majid Sarrafzadeh

This paper presents a Bayesian approach to learning the connectivity structure of a group of neurons from data on configuration frequencies. A major objective of the research is to provide statistical tools for detecting changes in firing…

机器学习 · 计算机科学 2013-02-18 Kathryn Blackmond Laskey , Laura Martignon

Inverse problems and, in particular, inferring unknown or latent parameters from data are ubiquitous in engineering simulations. A predominant viewpoint in identifying unknown parameters is Bayesian inference where both prior information…

统计计算 · 统计学 2022-08-31 Vahid Keshavarzzadeh , Robert M. Kirby , Akil Narayan

Reaction-times in perceptual tasks are the subject of many experimental and theoretical studies. With the neural decision making process as main focus, most of these works concern discrete (typically binary) choice tasks, implying the…

神经元与认知 · 定量生物学 2012-03-01 Laurent Bonnasse-Gahot , Jean-Pierre Nadal

We propose a computational model of visual search that incorporates Bayesian interpretations of the neural mechanisms that underlie categorical perception and saccade planning. To enable meaningful comparisons between simulated and human…

计算机视觉与模式识别 · 计算机科学 2020-06-08 Maell Cullen , Jonathan Monney , M. Berk Mirza , Rosalyn Moran

Our knowledge of the sensory world is encoded by neurons in sequences of discrete, identical pulses termed action potentials or spikes. There is persistent controversy about the extent to which the precise timing of these spikes is relevant…

神经元与认知 · 定量生物学 2007-05-23 Ilya Nemenman , Geoffrey D. Lewen , William Bialek , Rob R. de Ruyter van Steveninck

Converging evidence indicates that the heterogeneity of cognitive profiles may arise through detectable alternations in brain functions. Particularly, brain functional connectivity, measured under resting and cognitive states, characterizes…

应用统计 · 统计学 2023-02-22 Tianqi Chen , Chichun Tan , Hongyu Zhao , Todd Constable , Sarah Yip , Yize Zhao

Neuroscientists have enjoyed much success in understanding brain functions by constructing brain connectivity networks using data collected under highly controlled experimental settings. However, these experimental settings bear little…

机器学习 · 统计学 2019-06-24 Kean Ming Tan , Junwei Lu , Tong Zhang , Han Liu

We propose a method, based on persistent homology, to uncover topological properties of a priori unknown covariates of neuron activity. Our input data consist of spike train measurements of a set of neurons of interest, a candidate list of…

神经元与认知 · 定量生物学 2015-10-23 Gard Spreemann , Benjamin Dunn , Magnus Bakke Botnan , Nils A. Baas

Many properties of perceptual decision making are well-modeled by deep neural networks. However, such architectures typically treat decisions as instantaneous readouts, overlooking the temporal dynamics of the decision process. We present…

神经元与认知 · 定量生物学 2025-11-25 Hayden R. Johnson , Anastasia N. Krouglova , Hadi Vafaii , Jacob L. Yates , Pedro J. Gonçalves