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Totally asymmetric simple exclusion processes on lattices with junctions, where particles interact with hard-core exclusion and move on parallel lattice branches that at the junction combine into a single lattice segment, are investigated.…

统计力学 · 物理学 2009-11-11 Ekaterina Pronina , Anatoly B. Kolomeisky

Mixtures of microtubules and molecular motors form active materials with diverse dynamical behaviors that vary based on their constituents' molecular properties. We map the non-equilibrium phase diagram of microtubules and tip-accumulating…

软凝聚态物质 · 物理学 2021-08-04 Bezia Lemma , Noah P. Mitchell , Radhika Subramanian , Daniel J. Needleman , Zvonimir Dogic

Collective human movement is a hallmark of complex systems, exhibiting emergent order across diverse settings, from pedestrian flows to biological collectives. In high-speed scenarios, alignment interactions ensure efficient flow and…

物理与社会 · 物理学 2025-06-03 Debasish Sarker , Yi Zhang , Lynn K. Perry , Daniel S. Messinger , Chaoming Song

Motivated by the sidewise motions of dynein motors shown in experiments, we use a variant of the exclusion process to model the multistep dynamics of dyneins on a cylinder with open ends. Due to the varied step sizes of the particles in a…

统计力学 · 物理学 2021-10-19 Riya Nandi , Uwe C Tauber , Priyanka

We present initial results regarding the existence, stability and interaction of linear and nonlinear vibrational modes in a system of two coupled, one dimensional lattices with unequal numbers of masses. The effects on these nonlinear…

生物物理 · 物理学 2007-05-23 Kyle Forinash

Lattice gas automata with collision rules that violate the conditions of semi-detailed-balance exhibit algebraic decay of equal time spatial correlations between fluctuations of conserved densities. This is shown on the basis of a…

凝聚态物理 · 物理学 2009-10-28 H. J. Bussemaker , M. H. Ernst

Analytical formulas for effective drift, diffusivity, run times, and run lengths are derived for an intracellular transport system consisting of a cargo attached to two cooperative but not identical molecular motors (for example, kinesin-1…

亚细胞过程 · 定量生物学 2021-01-22 Joseph J. Klobusicky , John Fricks , Peter R. Kramer

We consider the asymmetric simple exclusion process (TASEP) on open network consisting of three consecutively coupled macroscopic chain segments with a shortcut between the tail of the first segment and the head of the third one. The model…

生物物理 · 物理学 2015-06-18 Nadezhda Bunzarova , Nina Pesheva , Jordan Brankov

To mimic the complex transport-like collective phenomena in a man-made or natural system, we study an open network junction model of totally asymmetric simple exclusion process with bulk particle attachment and detachment. The stationary…

统计力学 · 物理学 2022-02-23 Ankita Gupta , Arvind Kumar Gupta

In many important cellular processes, including mRNA translation, gene transcription, phosphotransfer, and intracellular transport, biological "particles" move along some kind of "tracks". The motion of these particles can be modeled as a…

亚细胞过程 · 定量生物学 2017-11-01 Yoram Zarai , Michael Margaliot , Tamir Tuller

The totally asymmetric simple exclusion process with generalized update is a version of the discrete time totally asymmetric exclusion process with an additional inter-particle interaction that controls the degree of particle clustering.…

统计力学 · 物理学 2024-03-21 Nadezhda Zh Bunzarova , Nina C Pesheva , Alexander M Povolotsky

We use cellular automata model to study the cooperation between cyclists. In the two-lane model, cyclists can change lanes. Even there is someone on the back they will take a cooperative attitude. It means that they will be in a same…

元胞自动机与格子气 · 物理学 2011-10-14 Chi-Yu Wang , Li-Hu Wang , Ruo-Hang Chen

A description of phase separation kinetics for solid binary (A,B) mixtures in thin film geometry based on the Kawasaki spin-exchange kinetic Ising model is presented in a discrete lattice molecular field formulation. It is shown that the…

统计力学 · 物理学 2009-11-13 Subir K. Das , Jürgen Horbach , Kurt Binder

We investigate the totally asymmetric simple exclusion process (TASEP) in the presence of obstacles that dynamically bind and unbind from the lattice. The model is motivated by biological processes such as transcription in the presence of…

统计力学 · 物理学 2020-10-21 Juraj Szavits-Nossan , Bartlomiej Waclaw

Considering the large deviations of activity and current in the Asymmetric Simple Exclusion Process (ASEP), we show that there exists a non-trivial correspondence between the joint scaled cumulant generating functions of activity and…

统计力学 · 物理学 2022-08-31 Matthieu Vanicat , Eric Bertin , Vivien Lecomte , Eric Ragoucy

We study the influence of filament elasticity on the motion of collective molecular motors. It is found that for a backbone flexibility exceeding a characteristic value (motor stiffness divided through the mean displacement between attached…

软凝聚态物质 · 物理学 2007-05-23 Andrej Vilfan , Erwin Frey , Franz Schwabl

Via computer simulations we study kinetics of pattern formation in a two-dimensional active matter system. Self-propulsion in our model is incorporated via the Vicsek-like activity, i.e., particles have the tendency of aligning their…

软凝聚态物质 · 物理学 2020-08-26 Saikat Chakraborty , Subir K. Das

Nonequilibrium collective motion is ubiquitous in nature and often results in a rich collection of intringuing phenomena, such as the formation of shocks or patterns, subdiffusive kinetics, traffic jams, and nonequilibrium phase…

统计力学 · 物理学 2011-12-20 Mauro Mobilia , Tobias Reichenbach , Hauke Hinsch , Thomas Franosch , Erwin Frey

Multi-particle dynamics in one-dimensional asymmetric exclusion processes with disorder is investigated theoretically by computational and analytical methods. It is argued that the general phase diagram consists of three non-equilibrium…

统计力学 · 物理学 2009-11-13 M. Ebrahim Foulaadvand , Anatoly Kolomeisky , Hamid Teymouri

In this manuscript, we introduce a geometry-based formalism to obtain a Meyer-Miller-Stock-Thoss mapping in order to study the dynamics of both isolated and interacting two-level systems. After showing the description of the isolated case…

量子物理 · 物理学 2026-04-06 Daniel Martínez Gil , Pedro Bargueño , Salvador Miret-Artés