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We consider the counting problem of the number of \textit{leaf-labeled increasing trees}, where internal nodes may have an arbitrary number of descendants. The set of all such trees is a discrete representation of the genealogies obtained…

种群与进化 · 定量生物学 2022-11-08 Johannes Wirtz

This paper introduces a new combinatorial framework for modeling the growth of binary trees through a discrete evolution process that incorporates a growing rule and an extinction rule. Building upon the theory of increasingly labeled…

组合数学 · 数学 2026-03-30 Olivier Bodini , Antoine Genitrini , Khaydar Nurligareev

A number of hook formulas and hook summation formulas have previously appeared, involving various classes of trees. One of these classes of trees is rooted trees with labelled vertices, in which the labels increase along every chain from…

组合数学 · 数学 2015-10-13 Valentin Féray , I. P. Goulden , A. Lascoux

Certain families of combinatorial objects admit recursive descriptions in terms of generating trees: each node of the tree corresponds to an object, and the branch leading to the node encodes the choices made in the construction of the…

We study the asymptotic number of certain monotonically labeled increasing trees arising from a generalized evolution process. The main difference between the presented model and the classical model of binary increasing trees is that the…

组合数学 · 数学 2019-10-30 Olivier Bodini , Antoine Genitrini , Bernhard Gittenberger , Stephan Wagner

Several hook summation formulae for binary trees have appeared recently in the literature. In this paper we present an analogous formula for unordered increasing trees of size r, which involves r parameters. The right-hand side can be…

组合数学 · 数学 2013-04-22 Valentin Féray , I. P. Goulden

We consider weighted generating functions of trees where the weights are products of functions of the sizes of the subtrees. This work begins with the observation that three different communities, largely independently, found substantially…

组合数学 · 数学 2014-12-19 Bradley R. Jones , Karen Yeats

In this short note we discuss recent results on hook length formulas of trees unifying some earlier results, and explain hook length formulas naturally associated to families of increasingly labelled trees.

组合数学 · 数学 2010-04-13 Markus Kuba

Generating trees are a useful technique in the enumeration of various combinatorial objects, particularly restricted permutations. Quite often the generating tree for the set of permutations avoiding a set of patterns requires infinitely…

组合数学 · 数学 2007-05-23 Vince Vatter

We construct generating trees with one, two, and three labels for some classes of permutations avoiding generalized patterns of length 3 and 4. These trees are built by adding at each level an entry to the right end of the permutation,…

组合数学 · 数学 2007-08-01 Sergi Elizalde

We study three families of labelled plane trees. In all these trees, the root is labelled 0, and the labels of two adjacent nodes differ by $0, 1$ or -1. One part of the paper is devoted to enumerative results. For each family, and for all…

组合数学 · 数学 2008-05-05 Mireille Bousquet-Mélou

We study the enumeration of spinal tree-child phylogenetic networks, a rigid family of tree-child networks in which all internal vertices lie on a single root--to--leaf path. We provide two complementary combinatorial frameworks. First, we…

组合数学 · 数学 2026-05-12 Pau Vives , Anna de Mier , Gabriel Cardona , Joan Carles Pons

We study the enumeration problem for different kind of tree parking functions introduced recently, called tree parking functions, tree parking distributions, prime tree parking functions, and prime tree parking distributions, for rooted…

组合数学 · 数学 2020-07-30 Alois Panholzer

Plane increasing trees are rooted labeled trees embedded into the plane such that the sequence of labels is increasing on any branch starting at the root. Relaxed binary trees are a subclass of unlabeled directed acyclic graphs. We…

组合数学 · 数学 2018-07-12 Michael Wallner

The Exponential Formula allows one to enumerate any class of combinatorial objects built by choosing a set of connected components and placing a structure on each connected component which depends only on its size. There are multiple…

组合数学 · 数学 2023-01-10 Robert Moerman , Lauren K. Williams

We generalize the concept of ascending and descending runs from permutations to rooted labelled trees and mappings, i.e., functions from the set $\{1, \dots, n\}$ into itself. A combinatorial decomposition of the corresponding functional…

组合数学 · 数学 2020-07-06 Marie-Louise Lackner , Alois Panholzer

Given a gene tree and a species tree, ancestral configurations represent the combinatorially distinct sets of gene lineages that can reach a given node of the species tree. They have been introduced as a data structure for use in the…

种群与进化 · 定量生物学 2016-10-25 Filippo Disanto , Noah A. Rosenberg

Labeled infinite trees provide combinatorial interpretations for many integer sequences generated by nested recurrence relations. Typically, such sequences are monotone increasing. Several of these sequences also have straightforward…

组合数学 · 数学 2022-11-07 Nathan Fox

We provide a fundamental result for bucket increasing trees, which gives a complete characterization of all families of bucket increasing trees that can be generated by a tree evolution process. We also provide several equivalent…

组合数学 · 数学 2022-06-14 Markus Kuba , Alois Panholzer

In mathematical phylogenetics, the time-consistent galled trees provide a simple class of rooted binary network structures that can be used to represent a variety of different biological phenomena. We study the enumerative combinatorics of…

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