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In this work we propose a generalization of Winfree's abstract Tile Assembly Model (aTAM) in which tile types are assigned rigid shapes, or geometries, along each tile face. We examine the number of distinct tile types needed to assemble…

计算几何 · 计算机科学 2015-03-19 Bin Fu , Matthew J. Patitz , Robert T. Schweller , Bobby Sheline

A challenge of molecular self-assembly is to understand how to design particles that self-assemble into a desired structure and not any of a potentially large number of undesired structures. Here we use simulation to show that a strategy of…

统计力学 · 物理学 2017-02-27 Stephen Whitelam

Given a set of $n$ points $P$ in the plane, each colored with one of the $t$ given colors, a color-spanning set $S\subset P$ is a subset of $t$ points with distinct colors. The minimum diameter color-spanning set (MDCS) is a color-spanning…

数据结构与算法 · 计算机科学 2018-05-16 Sergey Bereg , Feifei Ma , Wencheng Wang , Jian Zhang , Binhai Zhu

Tiling models are classical statistical models in which different geometric shapes, the tiles, are packed together such that they cover space completely. In this paper we discuss a class of two-dimensional tiling models in which the tiles…

统计力学 · 物理学 2015-06-24 Bernard Nienhuis

We introduce and study the Minimum Feasible Tileset problem: Given a set of symbols and subsets of these symbols (scenarios), find a smallest possible number of pairs of symbols (tiles) such that each scenario can be formed by selecting at…

计算复杂性 · 计算机科学 2017-10-26 Yann Disser , Stefan Kratsch , Manuel Sorge

The field of algorithmic self-assembly is concerned with the design and analysis of self-assembly systems from a computational perspective, that is, from the perspective of mathematical problems whose study may give insight into the natural…

神经与进化计算 · 计算机科学 2011-03-14 Fabio R. J. Vieira , Valmir C. Barbosa

In this paper, we work in a 2D version of the probabilistic variant of Winfree's abstract Tile Assembly Model defined by Chandran, Gopalkrishnan and Reif (SICOMP 2012) in which attaching tiles are sampled uniformly with replacement. First,…

数据结构与算法 · 计算机科学 2024-08-13 David Furcy , Scott M. Summers

Sequence-directed assembly processes - such as protein folding - allow the assembly of a large number of structures with high accuracy from only a small handful of fundamental building blocks. We aim to explore how efficiently sequence…

生物物理 · 物理学 2025-03-14 Jeremy Guntoro , Thomas Ouldridge

We investigate the problem of computing a minimum set of solutions that approximates within a specified accuracy $\epsilon$ the Pareto curve of a multiobjective optimization problem. We show that for a broad class of bi-objective problems…

数据结构与算法 · 计算机科学 2008-05-20 Ilias Diakonikolas , Mihalis Yannakakis

The area of parameterized approximation seeks to combine approximation and parameterized algorithms to obtain, e.g., (1+eps)-approximations in f(k,eps)n^{O(1)} time where k is some parameter of the input. We obtain the following results on…

数据结构与算法 · 计算机科学 2019-06-27 Fabrizio Grandoni , Stefan Kratsch , Andreas Wiese

DNA tile self-assembly has emerged as a rich and promising primitive for nano-technology. This paper studies the problems of minimizing assembly time and error rate by changing the tile concentrations because changing the tile…

数据结构与算法 · 计算机科学 2012-10-23 Ho-Lin Chen , Ming-Yang Kao

Patchy colloids are promising candidates for building blocks in directed self-assembly. To be successful the surface patterns need to both be simple enough to be synthesized, while feature-rich enough to cause the colloids to self-assemble…

软凝聚态物质 · 物理学 2014-05-13 Erik Edlund , Oskar Lindgren , Martin Nilsson Jacobi

We obtain tilings with a singular point by applying conformal maps on regular tilings of the Euclidean plane, and determine its symmetries. The resulting tilings are then symmetrically colored by applying the same conformal maps on…

度量几何 · 数学 2015-12-02 Imogene F. Evidente , Rene P. Felix , Manuel Joseph C. Loquias

The connection between self-assembly and computation suggests that a shape can be considered the output of a self-assembly ``program,'' a set of tiles that fit together to create a shape. It seems plausible that the size of the smallest…

计算复杂性 · 计算机科学 2008-06-22 David Soloveichik , Erik Winfree

Tile assembly systems in the abstract Tile Assembly Model (aTAM) are computationally universal and capable of building complex shapes, but DNA-based implementations encounter formidable error rates that stifle this theoretical potential.…

计算几何 · 计算机科学 2024-05-13 Phillip Drake , Daniel Hader , Matthew J. Patitz

We give a constructive method that can decrease the number of prototiles needed to tile a space. We achieve this by exchanging edge to edge matching rules for a small atlas of permitted patches. This method is illustrated with Wang tiles,…

组合数学 · 数学 2010-03-26 David Fletcher

We introduce a new property of tile self-assembly systems that we call size-separability. A system is size-separable if every terminal assembly is a constant factor larger than any intermediate assembly. Size-separability is motivated by…

计算几何 · 计算机科学 2014-04-30 Andrew Winslow

A coloring of a planar semiregular tiling $\mathcal{T}$ is an assignment of a unique color to each tile of $\mathcal{T}$. If $G$ is the symmetry group of $\mathcal{T}$, we say that the coloring is perfect if every element of $G$ induces a…

组合数学 · 数学 2024-01-02 Manuel Joseph C. Loquias , Rovin B. Santos

This paper presents a self-adaptive training (SAT) model for fashion compatibility prediction. It focuses on the learning of some hard items, such as those that share similar color, texture, and pattern features but are considered…

计算机视觉与模式识别 · 计算机科学 2022-06-28 Ling Xiao , Toshihiko Yamasaki

For a graph G = (V,E) where each vertex is coloured by one of k colours, consider a subset C of V such that for each vertex v in V\C, its set of nearest neighbours in C contains at least one vertex of the same colour as v. Such a C is…

计算几何 · 计算机科学 2023-05-31 Bubai Manna , Bodhayan Roy