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Genome sequencing technology has improved significantly in few last years and resulted in abundance genetic data. Artificial intelligence has been employed to analyze genetic data in response to its sheer size and variability. Gene…

基因组学 · 定量生物学 2023-03-17 Muhammad Anwari Leksono , Ayu Purwarianti

Breast cancer is not preventable because of its unknown causes. However, its early diagnosis increases patients' recovery chances. Machine learning (ML) can be utilized to improve treatment outcomes in healthcare operations while…

机器学习 · 计算机科学 2024-08-09 Kamyab Karimi , Ali Ghodratnama , Reza Tavakkoli-Moghaddam

Locating the promoter region in DNA sequences is of paramount importance in the field of bioinformatics. This is a problem widely studied in the literature, however, not yet fully resolved. Some researchers have presented remarkable results…

机器学习 · 计算机科学 2021-12-08 Lauro Moraes , Pedro Silva , Eduardo Luz , Gladston Moreira

Discovery of transcription factor binding sites is a much explored and still exploring area of research in functional genomics. Many computational tools have been developed for finding motifs and each of them has their own advantages as…

计算工程、金融与科学 · 计算机科学 2011-07-07 K. R Seeja

In recent era prediction of enzyme class from an unknown protein is one of the challenging tasks in bioinformatics. Day to day the number of proteins is increases as result the prediction of enzyme class gives a new opportunity to…

机器学习 · 计算机科学 2019-01-21 Chhote Lal Prasad Gupta , Anand Bihari , Sudhakar Tripathi

Classification model selection is a process of identifying a suitable model class for a given classification task on a dataset. Traditionally, model selection is based on cross-validation, meta-learning, and user preferences, which are…

机器学习 · 计算机科学 2023-05-24 Sudarsun Santhiappan , Nitin Shravan , Balaraman Ravindran

Due to the rapid innovation of technology and the desire to find and employ biomarkers for neurodegenerative disease, high-dimensional data classification problems are routinely encountered in neuroimaging studies. To avoid over-fitting and…

机器学习 · 统计学 2018-06-19 Shan Shi , Farouk Nathoo

Pre-mRNA splicing relies on the poorly understood dynamic interplay between >150 protein components of the spliceosome. The steps at which splicing can be regulated remain largely unknown. We systematically analyzed the effect of knocking…

分子网络 · 定量生物学 2015-01-19 Panagiotis Papasaikas , J. Ramon Tejedor , Luisa Vigevani , Juan Valcarcel

Medical Informatics and the application of modern signal processing in the assistance of the diagnostic process in medical imaging is one of the more recent and active research areas today. This thesis addresses a variety of issues related…

计算机视觉与模式识别 · 计算机科学 2009-10-20 Harris Georgiou

Motivation: Many researchers with domain expertise are unable to easily apply machine learning to their bioinformatics data due to a lack of machine learning and/or coding expertise. Methods that have been proposed thus far to automate…

机器学习 · 计算机科学 2020-04-29 William La Cava , Heather Williams , Weixuan Fu , Steve Vitale , Durga Srivatsan , Jason H. Moore

Multiple Sequences Alignment (MSA) of biological sequences is a fundamental problem in computational biology due to its critical significance in wide ranging applications including haplotype reconstruction, sequence homology, phylogenetic…

分布式、并行与集群计算 · 计算机科学 2009-05-13 Fahad Saeed , Ashfaq Khokhar

The field of protein folding research has been greatly advanced by deep learning methods, with AlphaFold2 (AF2) demonstrating exceptional performance and atomic-level precision. As co-evolution is integral to protein structure prediction,…

定量方法 · 定量生物学 2023-06-06 Le Zhang , Jiayang Chen , Tao Shen , Yu Li , Siqi Sun

Supervised machine learning classifiers sometimes face challenges related to the performance, accuracy, or overfitting. This paper introduces the Artificial Liver Classifier (ALC), a novel supervised learning model inspired by the human…

人工智能 · 计算机科学 2025-09-24 Mahmood A. Jumaah , Yossra H. Ali , Tarik A. Rashid

This study introduces a framework that integrates nonlinear feature extraction, classification, and efficient optimization. First, kernel principal component analysis with a radial basis function kernel reduces dimensionality while…

机器学习 · 计算机科学 2025-06-23 Iliyas Ibrahim Iliyas , Souley Boukari , Abdulsalam Yau Gital

X-ray scattering measurements of in situ human brain tissue encode structural signatures of pathological cross-$\beta$ inclusions, yet systematic exploitation of these data for automated detection remains challenging due to substrate…

图像与视频处理 · 电气工程与系统科学 2025-11-18 Abdullah Al Bashit , Prakash Nepal , Lee Makowski

Imposing key anatomical features, such as the number of organs, their shapes and relative positions, is crucial for building a robust multi-organ segmentation model. Current attempts to incorporate anatomical features include broadening the…

计算机视觉与模式识别 · 计算机科学 2024-08-27 Young Seok Jeon , Hongfei Yang , Huazhu Fu , Mengling Feng

This paper designs an efficient two-class pattern classifier utilizing asynchronous cellular automata (ACAs). The two-state three-neighborhood one-dimensional ACAs that converge to fixed points from arbitrary seeds are used here for pattern…

元胞自动机与格子气 · 物理学 2016-02-01 Biswanath Sethi , Souvik Roy , Sukanta Das

Prostate cancer diagnosis through MR imaging have currently relied on radiologists' interpretation, whilst modern AI-based methods have been developed to detect clinically significant cancers independent of radiologists. In this study, we…

图像与视频处理 · 电气工程与系统科学 2026-01-09 Xiangcen Wu , Yipei Wang , Qianye Yang , Natasha Thorley , Shonit Punwani , Veeru Kasivisvanathan , Ester Bonmati , Yipeng Hu

This paper aims at providing a survey on the problems that can be easily addressed by clonalbased cellular automata in bioinformatics. Researchers try to address the problems in bioinformatics independent of each problem. None of the…

计算工程、金融与科学 · 计算机科学 2014-05-14 Pokkuluri Kiran Sree , Inampudi Ramesh Babu

Biologically inspired computing techniques are very effective and useful in many areas of research including data clustering. Ant clustering algorithm is a nature-inspired clustering technique which is extensively studied for over two…

神经与进化计算 · 计算机科学 2021-07-16 Md Ali Azam , Abir Hossen , Md Hafizur Rahman