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相关论文: Variational analysis of a mesoscale model for bila…

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In this paper we introduce a mesoscale continuum model for membranes made of two different types of amphiphilic lipids. The model extends work by Peletier and the second author [Arch. Ration. Mech. Anal. 193, 2009] for the one-phase case.…

偏微分方程分析 · 数学 2024-03-25 Jakob Fuchs , Matthias Röger

Bridging the gap between atomistic detail and continuum mechanics is a central challenge in modeling biological membranes, particularly for mesoscopic phenomena spanning large length and time scales. In this work, we introduce a new,…

软凝聚态物质 · 物理学 2026-03-02 Pietro Sillano , Siewert-Jan Marrink , Timon Idema

We present Monte Carlo simulations of an ultra coarse-grained lipid bilayer with different number of lipids on both leaflets. In the simulations, we employ a new method for measuring the elastic parameters of the membrane, including the…

软凝聚态物质 · 物理学 2025-05-20 Oded Farago

We derived free energy functional of a bilayer lipid membrane from the first principles of elasticity theory. The model explicitly includes position-dependent mutual slide of monolayers and bending deformation. Our free energy functional of…

软凝聚态物质 · 物理学 2009-11-10 S. V. Baoukina , S. I. Mukhin

The elastic properties of two-component bilayer membranes are studied using a coarse grain model for amphiphilic molecules. The two species of amphiphiles considered here differ only in their length. Molecular Dynamics simulations are…

软凝聚态物质 · 物理学 2007-05-23 Alberto Imparato , Julian C. Shillcock , Reinhard Lipowsky

We preset a computational study of bending models for the curvature elasticity of lipid bilayer membranes that are relevant for simulations of vesicles and red blood cells. We compute bending energy and forces on triangulated meshes and…

计算工程、金融与科学 · 计算机科学 2020-01-08 Xin Bian , Sergey Litvinov , Petros Koumoutsakos

A cell membrane can be simply regarded as composite material consisting of lipid bilayer, membrane cytoskeleton beneath lipid bilayer, and proteins embedded in lipid bilayer and linked with membrane cytoskeleton if one only concerns its…

其他定量生物学 · 定量生物学 2007-06-26 Z. C. Tu , R. An , Z. C. Ou-Yang

Common models for two-phase lipid bilayer membranes are based on an energy that consists of an elastic term for each lipid phase and a line energy at interfaces. Although such an energy controls only the length of interfaces, the membrane…

偏微分方程分析 · 数学 2016-03-10 Michael Helmers

The elastic properties of a self-assembled bilayer membrane are studied using the self-consistent field theory, applied to a model system composed of flexible amphiphilic chains dissolved in hydrophilic polymeric solvents. Examining the…

生物物理 · 物理学 2013-07-19 Jianfeng Li , Kyle A. Pastor , An-Chang Shi , Friederike Schmid , Jiajia Zhou

The quantitative understanding of membranes is still rooted in work performed in the 1970s by Helfrich and others, concerning amphiphilic bilayers. However, most biological membranes contain a wide variety of nonamphiphilic molecules too.…

软凝聚态物质 · 物理学 2014-06-10 Richard G. Morris

We use a simple and efficient computer model to investigate the physical properties of bilayer membranes. The amphiphilic molecules are modeled as short rigid trimers with finite range pair interactions between them. The pair potentials…

软凝聚态物质 · 物理学 2009-11-10 Oded Farago

Morphological dynamics of bilayer membrane is intrinsically coupled to the translational and orientational localization of membrane proteins. In this paper we are concerned with the orientational localization of membrane proteins in the…

定量方法 · 定量生物学 2018-03-12 Y. C. Zhou

The conformational free energy landscape of a system is a fundamental thermodynamic quantity of importance particularly in the study of soft matter and biological systems, in which the entropic contributions play a dominant role. While…

生物物理 · 物理学 2015-10-13 N. Ramakrishnan , Richard W. Tourdot , Ravi Radhakrishnan

Biological membranes constitute boundaries of cells and cell organelles. Physico-chemical mechanisms at the atomic scale are dictated by protein-lipid interaction strength, lipid composition, lipid distribution in the vicinity of the…

生物物理 · 物理学 2015-10-19 N. Ramakrishnan , P. B. Sunil Kumar , Ravi Radhakrishnan

In this article we review the present knowledge on the elastic properties of membranes of biological origin. Assuming the fluid mosaic hypothesis, we consider the phospholipid bilayer as the structural base of a biological membrane. We…

软凝聚态物质 · 物理学 2015-06-11 L. Martínez-Balbuena , A. Maldonado-Arce , E. Hernández-Zapata

We derive and analyze a novel approach for modeling and computing the mechanical relaxation of incommensurate 2D heterostructures. Our approach parametrizes the relaxation pattern by the compact local configuration space rather than real…

计算物理 · 物理学 2019-09-04 Paul Cazeaux , Mitchell Luskin , Daniel Massatt

Motivated by a model for lipid bilayer cell membranes, we study the minimization of the Willmore functional in the class of oriented closed surfaces with prescribed total mean curvature, prescribed area, and prescribed genus. Adapting…

微分几何 · 数学 2024-03-22 Christian Scharrer , Alexander West

We propose a model to study symmetric binary fluids, based in the mesoscopic molecular simulation technique known as multiparticle collision, where space and state variables are continuous while time is discrete. We include a repulsion rule…

适应与自组织系统 · 物理学 2016-06-22 C. Echeverria , K. Tucci , O. Alvarez-Llamoza , E. E. Orozco-Guillén , M. Morales , M. G. Cosenza

A justification of heterogeneous membrane models as zero-thickness limits of a cylindral three-dimensional heterogeneous nonlinear hyperelastic body is proposed in the spirit of Le Dret & Raoult. Specific characterizations of the 2D elastic…

偏微分方程分析 · 数学 2007-05-23 Jean-Francois Babadjian , Gilles A. Francfort

We study the relaxation dynamics of a compressible bilayer vesicle with an asymmetry in the viscosity of the inner and outer fluid medium. First we explore the stability of the vesicle free energy which includes a coupling between the…

软凝聚态物质 · 物理学 2017-01-03 T. V. Sachin Krishnan , Ryuichi Okamoto , Shigeyuki Komura
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