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Rapid advances in genetics, genomics, and imaging have given insight into the molecular and cellular basis of behaviour in a variety of model organisms with unprecedented detail and scope. It is increasingly routine to isolate behavioural…

定量方法 · 定量生物学 2013-01-08 André E. X. Brown , William R. Schafer

Darwinian evolution can be illustrated as an uphill walk in a landscape, where the surface consists of genotypes, the height coordinates represent fitness, and each step corresponds to a point mutation. Epistasis, roughly defined as the…

定量方法 · 定量生物学 2013-05-08 Kristina Crona

How adaptive evolution to one environmental stress improves or suppresses adaptation to another is an important problem in evolutionary biology. For instance, in microbiology, the evolution of bacteria to be resistant to different…

种群与进化 · 定量生物学 2023-02-23 Takuya U. Sato , Chikara Furusawa , Kunihiko Kaneko

The hypothetical global delivery schedule of Santa Claus must follow strict rolling night-time windows that vary with the Earth's rotation and obey an energy budget that depends on payload size and cruising speed. To design this schedule,…

应用统计 · 统计学 2025-12-23 Elliot Fisher , Robin Smith

An ant colony optimization approach for partitioning a set of objects is proposed. In order to minimize the intra-variance, or within sum-of-squares, of the partitioned classes, we construct ant-like solutions by a constructive approach…

机器学习 · 统计学 2019-12-04 Jeffry Chavarria-Molina , Juan Jose Fallas-Monge , Javier Trejos-Zelaya

Most theories of evolutionary diversification are based on equilibrium assumptions: they are either based on optimality arguments involving static fitness landscapes, or they assume that populations first evolve to an equilibrium state…

种群与进化 · 定量生物学 2017-02-07 Iaroslav Ispolatov , Vaibhav Madhok , Michael Doebeli

This paper introduces a variational formulation of natural selection, paying special attention to the nature of "things" and the way that different "kinds" of "things" are individuated from - and influence - each other. We use the Bayesian…

种群与进化 · 定量生物学 2023-07-05 Karl Friston , Daniel Ari Friedman , Axel Constant , V. Bleu Knight , Thomas Parr , John O. Campbell

Recently, many evolutionary computation methods have been developed to solve the feature selection problem. However, the studies focused mainly on small-scale issues, resulting in stagnation issues in local optima and numerical instability…

神经与进化计算 · 计算机科学 2021-10-28 Xubin Wang , Yunhe Wang , Ka-Chun Wong , Xiangtao Li

Natural environments pose significant challenges for autonomous robot navigation, particularly due to their unstructured and ever-changing nature. Hiking trails, with their dynamic conditions influenced by weather, vegetation, and human…

机器人学 · 计算机科学 2024-09-25 Camndon Reed , Christopher Tatsch , Jason N. Gross , Yu Gu

We discuss a new optimization strategy, which considerably improves the effectivity of evolutionary algorithms applied to a certain class of optimization problems. The basic principle is to solve first a simpler related problem, which is…

无序系统与神经网络 · 物理学 2007-05-23 Volkhard Buchholtz , Thorsten Poeschel

Evolutionary algorithms have been frequently applied to constrained continuous optimisation problems. We carry out feature based comparisons of different types of evolutionary algorithms such as evolution strategies, differential evolution…

人工智能 · 计算机科学 2015-09-24 Shayan Poursoltan , Frank Neumann

Efficient transportation, a hot topic in nonlinear science, is essential for modern societies and the survival of biological species. Biological evolution has generated a rich variety of successful solutions, which have inspired engineers…

统计力学 · 物理学 2009-11-10 Audrey Dussutour , Vincent Fourcassie , Dirk Helbing , Jean-Louis Deneubourg

The genotype-fitness map plays a fundamental role in shaping the dynamics of evolution. However, it is difficult to directly measure a fitness landscape in practice, because the number of possible genotypes is astronomical. One approach is…

种群与进化 · 定量生物学 2014-11-11 Jakub Otwinowski , Joshua B. Plotkin

In the past few decades, many multiobjective evolutionary optimization algorithms (MOEAs) have been proposed to find a finite set of approximate Pareto solutions for a given problem in a single run, each with its own structure. However, in…

神经与进化计算 · 计算机科学 2024-04-30 Xi Lin , Xiaoyuan Zhang , Zhiyuan Yang , Qingfu Zhang

In NeuroEvolution, the topologies of artificial neural networks are optimized with evolutionary algorithms to solve tasks in data regression, data classification, or reinforcement learning. One downside of NeuroEvolution is the large amount…

神经与进化计算 · 计算机科学 2019-02-12 Jörg Stork , Martin Zaefferer , Thomas Bartz-Beielstein

A key aspect of the design of evolutionary and swarm intelligence algorithms is studying their performance. Statistical comparisons are also a crucial part which allows for reliable conclusions to be drawn. In the present paper we gather…

神经与进化计算 · 计算机科学 2020-02-26 J. Carrasco , S. García , M. M. Rueda , S. Das , F. Herrera

The advent of plant phenomics, coupled with the wealth of genotypic data generated by next-generation sequencing technologies, provides exciting new resources for investigations into and improvement of complex traits. However, these new…

基因组学 · 定量生物学 2019-04-30 Gota Morota , Diego Jarquin , Malachy T. Campbell , Hiroyoshi Iwata

This work presents a new evolutionary optimization algorithm in theoretical mathematics with important applications in scientific computing. The use of the evolutionary algorithm is justified by the difficulty of the study of the…

代数几何 · 数学 2017-10-31 Ivan Martino , Giuseppe Nicosia

During their evolution, proteins explore sequence space via an interplay between random mutations and phenotypic selection. Here we build upon recent progress in reconstructing data-driven fitness landscapes for families of homologous…

生物大分子 · 定量生物学 2022-01-28 Matteo Bisardi , Juan Rodriguez-Rivas , Francesco Zamponi , Martin Weigt

The aim of this paper is two-fold. First, we propose a new computational method to investigate the particularities of evolution. Second, we apply this method to a model of gene regulatory networks (GRNs) and explore the evolution of…

分子网络 · 定量生物学 2022-01-21 Tadamune Kaneko , Macoto Kikuchi