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Pattern-diluted associative networks were introduced recently as models for the immune system, with nodes representing T-lymphocytes and stored patterns representing signalling protocols between T- and B-lymphocytes. It was shown earlier…

无序系统与神经网络 · 物理学 2015-04-17 Elena Agliari , Alessia Annibale , Adriano Barra , A. C. C. Coolen , Daniele Tantari

In this work we adopt a statistical mechanics approach to investigate basic, systemic features exhibited by adaptive immune systems. The lymphocyte network made by B-cells and T-cells is modeled by a bipartite spin-glass, where, following…

细胞行为 · 定量生物学 2015-06-04 Elena Agliari , Adriano Barra , Silvia Bartolucci , Andrea Galluzzi , Francesco Guerra , Francesco Moauro

The phenomenon of immunological memory has been known for a long time. But, the underlying mechanism is poorly understood. According to the theory of clonal selection the response to a specific invading antigen (e.g., bacteria) is offered…

统计力学 · 物理学 2007-05-23 Debashish Chowdhury

We consider the mutual interactions, via cytokine exchanges, among helper lymphocytes, B lymphocytes and killer lymphocytes, and we model them as a unique system by means of a tripartite network. Each part includes all the different clones…

生物物理 · 物理学 2015-03-19 Elena Agliari , Adriano Barra , Francesco Guerra , Francesco Moauro

Associative network models featuring multi-tasking properties have been introduced recently and studied in the low load regime, where the number $P$ of simultaneously retrievable patterns scales with the number $N$ of nodes as $P\sim \log…

无序系统与神经网络 · 物理学 2013-03-01 Elena Agliari , Alessia Annibale , Adriano Barra , A. C. C. Coolen , Daniele Tantari

Understanding and modelling the complexity of the immune system is a challenge that is shared by the ImmunoComplexiT$^1$ thematic network from the RNSC. The immune system is a complex biological, adaptive, highly diversified, self-organized…

定量方法 · 定量生物学 2020-08-27 Véronique Thomas-Vaslin

The adaptive immune system of vertebrates can detect, respond to, and memorize diverse pathogens from past experience. While the clonal selection of T helper (Th) cells is the simple and established mechanism to better recognize new…

种群与进化 · 定量生物学 2021-03-17 Takuya Kato , Tetsuya J. Kobayashi

The immunological synapse is a patterned collection of different types of receptors and ligands that forms in the intercellular junction between T Cells and antigen presenting cells (APCs) during recognition. The synapse is implicated in…

软凝聚态物质 · 物理学 2009-11-10 Subhadip Raychaudhuri , Arup K. Chakraborty , Mehran Kardar

A model of bit-strings, that uses the technique of multi-spin coding, was previously used to study the time evolution of B-cell clone repertoire, in a paper by Lagreca, Almeida and Santos. In this work we extend that simplified model to…

种群与进化 · 定量生物学 2017-07-31 Alexandre de Castro

The immune system can be thought as a complex network of different interacting elements. A cellular automaton, defined in shape-space, was recently shown to exhibit self-regulation and complex behavior and is, therefore, a good candidate to…

统计力学 · 物理学 2009-10-31 Rita Maria Zorzenon dos Santos , Americo T. Bernardes

Many events in the vertebrate immune system are influenced by some element of chance. The objective of the present work is to describe affinity maturation of B lymphocytes (in which random events are perhaps the most characteristic), and to…

分子网络 · 定量生物学 2015-05-05 Tamás Szabados , Gábor Tusnády , László Varga , Tibor Bakács

We cast the metabolism of interacting cells within a statistical mechanics framework considering both, the actual phenotypic capacities of each cell and its interaction with its neighbors. Reaction fluxes will be the components of…

分子网络 · 定量生物学 2020-04-08 Jorge Fernandez-de-Cossio-Diaz , Roberto Mulet

In order to target threatening pathogens, the adaptive immune system performs a continuous reorganization of its lymphocyte repertoire. Following an immune challenge, the B cell repertoire can evolve cells of increased specificity for the…

种群与进化 · 定量生物学 2022-03-23 Victor Chardès , Massimo Vergassola , Aleksandra M. Walczak , Thierry Mora

We argue that immune system is an adaptive complex system. It is shown that it has emergent properties. Its network structure is of the small world network type. The network is of the threshold type, which helps in avoiding autoimmunity. It…

种群与进化 · 定量生物学 2008-01-08 E. Ahmed , A. H. Hashish

Some years ago a cellular automata model was proposed to describe the evolution of the immune repertoire of B cells and antibodies based on Jerne's immune network theory and shape-space formalism. Here we investigate if the networks…

生物物理 · 物理学 2012-01-31 Hallan Souza-e-Silva , Rita Maria Zorzenon dos Santos

Recently we have used a cellular automata model which describes the dynamics of a multi-connected network to reproduce the refractory behavior and aging effects obtained in immunization experiments performed with mice when subjected to…

统计力学 · 物理学 2007-05-23 Mauro Copelli , Rita M. Zorzenon dos Santos , Daniel A. Stariolo

Immune system is the most important defense system to resist human pathogens. In this paper we present an immune model with bipartite graphs theory. We collect data through COPE database and construct an immune cell- mediators network. The…

适应与自组织系统 · 物理学 2007-12-06 Sheng-Rong Zou , Yu-Jing Peng , Zhong-Wei Guo , Ta Zhou , Chang-gui Gu , Da-Ren He

The coming 5G networks have been enabling the creation of a wide variety of new services and applications which demand a new network security architecture. Immunology is the study of the immune system in vertebrates (including humans) which…

密码学与安全 · 计算机科学 2020-01-28 Quan Yu , Jing Ren , Jiyan Zhang , Siyang Liu , Yinjin Fu , Ying Li , Linru Ma , Jian Jing , Wei Zhang

Biological systems are driven by intricate interactions among the complex array of molecules that comprise the cell. Many methods have been developed to reconstruct network models of those interactions. These methods often draw on large…

分子网络 · 定量生物学 2018-06-29 Marieke Lydia Kuijjer , Matthew Tung , GuoCheng Yuan , John Quackenbush , Kimberly Glass

The biological immune system is a robust, complex, adaptive system that defends the body from foreign pathogens. It is able to categorize all cells (or molecules) within the body as self-cells or non-self cells. It does this with the help…

人工智能 · 计算机科学 2010-07-05 Uwe Aickelin , Dipankar Dasgupta
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