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The influence of decoherence and bonding on the linear conductance of single double-stranded DNA molecules is examined by fitting a phenomenological statistical model developed recently (EPJB {\bf 68}, 237 (2009)) to experimental results.…

软凝聚态物质 · 物理学 2010-09-30 M. Zilly , O. Ujsaghy , D. E. Wolf

Modeling charge transport in DNA is essential to understand and control the electrical properties and develop DNA-based nanoelectronics. DNA is a fluctuating molecule that exists in a solvent environment, which makes the electron…

生物物理 · 物理学 2023-10-05 Hashem Mohammad , M. P. Anantram

In the field of DNA nanotechnology, it is common wisdom that charge transport occurs through the {\pi} stacked bases of double-stranded DNA. However, recent experimental findings by Zhuravel et. al. [Nat. Nanotech. 15, 836 (2020)] suggest…

介观与纳米尺度物理 · 物理学 2024-12-31 Sourav Kundu , Siddhartha Lal

We study an intermediate quantum coherent-incoherent charge transport mechanism in metal-molecule-metal junctions using B\"uttiker's probe technique. This tool allows us to include incoherent effects in a controlled manner, and thus to…

介观与纳米尺度物理 · 物理学 2017-04-12 Hyehwang Kim , Michael Kilgour , Dvira Segal

Cytosine methylation has been found to play a crucial role in various biological processes, including a number of human diseases. The detection of this small modification remains challenging. In this work, we computationally explore the…

生物物理 · 物理学 2017-02-21 Jianqing Qi , Niranjan Govind , M. P. Anantram

Nanoscale molecular systems such as DNA require an atomistic quantum treatment to accurately capture their electrical properties, owing to their small dimensions. A central challenge in modeling transport through these systems is the…

其他凝聚态物理 · 物理学 2026-03-09 Hashem Mohammad , M. P. Anantram

In this work we investigate the interplay between coherent and incoherent charge transport in cytosine-guanine (GC) rich DNA molecules. Our objective is to introduce physically grounded approach to dephasing in large molecules and to…

介观与纳米尺度物理 · 物理学 2018-05-09 Patrick Karasch , Dmitry A. Ryndyk , Thomas Frauenheim

We study DNA denaturation by integrating elasticity -- as described by the Gaussian network model -- with bond binding energies, distinguishing between different base-pair and stacking energies. We use exact calculation, within the model,…

软凝聚态物质 · 物理学 2016-11-03 Amit Raj Singh , Rony Granek

The paper deals with the nonequilibrium two-lead Anderson model, considered as an adequate description for transport through a d-c biased quantum dot. Using a self-consistent equation-of-motion method generalized out of equilibrium, we…

强关联电子 · 物理学 2011-03-11 Raphaël Van Roermund , Shiue-yuan Shiau , Mireille Lavagna

Rapid and cost-effective DNA sequencing at the single nucleotide level might be achieved by measuring a transverse electronic current as single-stranded DNA is pulled through a nano-sized pore. In order to enhance the electronic coupling…

介观与纳米尺度物理 · 物理学 2015-05-30 X. Chen , I. Rungger , C. D. Pemmaraju , U. Schwingenschlogl , S. Sanvito

Charge transfer can take place along double helical DNA over distances as long as 30 nanometers. However, given the active role of the thermal environment surrounding charge carriers in DNA, physical mechanisms driving the transfer process…

介观与纳米尺度物理 · 物理学 2020-12-04 Roman Korol , Dvira Segal

Motivated by the wide ranging experimental results on the conductivity of DNA, we have investigated extraordinary configurations and chemical environments in which DNA might become a true molecular wire, perticularly from enhanced…

软凝聚态物质 · 物理学 2009-09-29 R. G. Endres , D. L. Cox , R. R. P. Singh

Debates about conductivity of DNAs have been recently renewed due to contradictory results of direct measurements by use of electrical contacts to molecules. In several works it was discovered that double-stranded (ds)DNAs are conductors:…

凝聚态物理 · 物理学 2007-05-23 A. Yu. Kasumov , D. V. Klinov

We propose a model Hamiltonian for describing charge transport through short homogeneous double stranded DNA molecules. We show that the hybridization of the overlapping pi orbitals in the base-pair stack coupled to the backbone is…

软凝聚态物质 · 物理学 2016-08-31 G. Cuniberti , L. Craco , D. Porath , C. Dekker

Charge transfer in a DNA duplex chain is studied by constructing a system with virtual electrodes connected at the ends of each DNA strand. The systeym is described by the tight-binding model and its transport is analyzed by the transfer…

介观与纳米尺度物理 · 物理学 2009-11-11 X. F. Wang , Tapash Chakraborty

We report theoretical studies of charge transport in single-stranded DNA in the direction perpendicular to the backbone axis. We find that, if the electrodes which sandwich the DNA have the appropriate spatial width, each nucleotide carries…

其他凝聚态物理 · 物理学 2010-11-03 Michael Zwolak , Massimiliano Di Ventra

We present a very simple model for the study of charge transport in a molecule patterned on B-DNA. In this model we use a discrete non-linear Schr\"{o}dinger equation to describe electrons propagating along the sugar-phosphate backbone of…

软凝聚态物质 · 物理学 2009-11-10 Niels R. Walet , Wojtek J. Zakrzewski

We present a generic model for DNA at the base-pair level. We use a variant of the Gay-Berne potential to represent the stacking energy between neighboring base-pairs. The sugar-phosphate backbones are taken into account by semi-rigid…

软凝聚态物质 · 物理学 2009-11-10 Boris Mergell , Mohammad R. Ejtehadi , Ralf Everaers

In this work we attempt to elucidate the nature of conductivity in polymers by taking the acid-base doped polyaniline (PAni) polymer. We evaluate the PAni conductance by using realistic ab initio parameters and including decoherent…

无序系统与神经网络 · 物理学 2010-10-06 Carlos J. Cattena , Raúl A. Bustos-Marún , Horacio M. Pastawski

We studied the electrical conductivity of DNA molecules with conducting atomic force microscopy as a function of the chemical nature of the substrate surfaces, the nature of the electrical contact, and the number of DNA molecules (from a…

材料科学 · 物理学 2009-11-10 Thomas Heim , Dominique Deresmes , Dominique Vuillaume
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