相关论文: Reply to Comment on 'Length Scale Dependence of DN…
Some theoretical and experimental aspects regarding the direct dark matter field are mentioned. In particular some arguments, which play a relevant role in the evaluation of model dependent interpretations of experimental results and in…
Does quantum dynamics play a role in DNA replication? What type of tests would reveal that? Some statistical checks that distinguish classical and quantum dynamics in DNA replication are proposed.
Long range charge transfer experiments in DNA oligomers and the subsequently measured -- and very diverse -- transport response of DNA wires in solid state experiments exemplifies the need for a thorough theoretical understanding of charge…
Reply to the Comment by S.V. Kravchenko, A.A. Shashkin, and V.T. Dolgopolov [cond-mat/0106056]
While the behavior of double stranded DNA at mesoscopic scales is fairly well understood, less is known about its relation to the rich mechanical properties in the base-pair scale, which is crucial, for instance, to understand DNA-protein…
A derivation of the Bohm model, and some general comments about it, are given. A modification of the model which is formally local and Lorentz-invariant is introduced, and its properties studied for a simple experiment.
The possibility that the sliding motion of proteins on DNA is influenced by the base sequence through a base pair reading interaction, is considered. Referring to the case of the T7 RNA-polymerase, we show that the protein should follow a…
In this manuscript the authors present a detailed answer to the comment in order to avoid misunderstandings in the future.
We introduce a sequence-dependent parametrization for a coarse-grained DNA model [T. E. Ouldridge, A. A. Louis, and J. P. K. Doye, J. Chem. Phys. 134, 085101 (2011)] originally designed to reproduce the properties of DNA molecules with…
Comment on "Quantifying the Fraction of Missing Information for Hypothesis Testing in Statistical and Genetic Studies" [arXiv:1102.2774]
Cooperativity plays an important role in the action of proteins bound to DNA. A simple, mechanical mechanism for cooperativity, in the form of a tension-mediated interaction between proteins bound to DNA at two different locations is…
In this work we investigate the electronic transport along model DNA molecules using an effective tight-binding approach that includes the backbone on site energies. The localization length and participation number are examined as a…
Reply to comment appeared on hep-lat/9912014.
Comment on ``The 2005 Neyman Lecture: Dynamic Indeterminism in Science'' [arXiv:0808.0620]
Comment on ``The 2005 Neyman Lecture: Dynamic Indeterminism in Science'' [arXiv:0808.0620]
Predicting the structural response of advanced multiphase alloys and understanding the underlying microscopic mechanisms that are responsible for it are two critically important roles modeling plays in alloy development. An alloys…
The formation of DNA loops by proteins and protein complexes is ubiquitous to many fundamental cellular processes, including transcription, recombination, and replication. Here we review recent advances in understanding the properties of…
A small collection of general facts related to DNA is presented
Influence of the Range of Interaction on the Stability of the Nucleus propagating with Momentum Dependent Interactions.
This work concerns formal descriptions of DNA code properties, and builds on previous work on transducer descriptions of classic code properties and on trajectory descriptions of DNA code properties. This line of research allows us to give…