相关论文: Combinatorial and Geometric Properties of Planar L…

Using connections to random matrix theory and orthogonal polynomials, we develop a framework for obtaining explicit closed-form formulae for the number, $\mathscr{N}_{g}(2\nu,j)$, of connected $2\nu$-valent labeled graphs with $j$ vertices…

A linkage is a finite graph with lengths assigned to each edge. A planar realization is a map to the plane which preserves edge lengths. It can be thought of as a mechanical device formed from stiff rods and rotating joints. We look at the…

We give a combinatorial characterization of graphs whose normalized Laplacian has three distinct eigenvalues. Strongly regular graphs and complete bipartite graphs are examples of such graphs, but we also construct more exotic families of…

In this paper we investigate undirected discrete graphical tree models when all the variables in the system are binary, where leaves represent the observable variables and where all the inner nodes are unobserved. A novel approach based on…

Polymer physics models suggest that chromatin spontaneously folds into loop networks with transcription units (TUs), such as enhancers and promoters, as anchors. Here we use combinatoric arguments to enumerate the emergent chromatin loop…

We present new algorithm for growth of non-clustered planar graphs by aggregation of cells with given distribution of size and constraint of connectivity k=3 per node. The emergent graph structures are controlled by two parameters--chemical…

We study straight-line drawings of planar graphs with few segments and few slopes. Optimal results are obtained for all trees. Tight bounds are obtained for outerplanar graphs, 2-trees, and planar 3-trees. We prove that every 3-connected…

We demonstrate that graph-based models are fully capable of representing higher-order interactions, and have a long history of being used for precisely this purpose. This stands in contrast to a common claim in the recent literature on…

Given a set of points in the plane, we want to establish a connection network between these points that consists of several disjoint layers. Motivated by sensor networks, we want that each layer is spanning and plane, and that no edge is…

In a planar L-drawing of a directed graph (digraph) each edge e is represented as a polyline composed of a vertical segment starting at the tail of e and a horizontal segment ending at the head of e. Distinct edges may overlap, but not…

Tree representations of (sets of) symmetric binary relations, or equivalently edge-colored undirected graphs, are of central interest, e.g.\ in phylogenomics. In this context symbolic ultrametrics play a crucial role. Symbolic ultrametrics…

We consider the problem of finding the minimum-weight subgraph that satisfies given connectivity requirements. Specifically, given a requirement $r \in \{0,1,2,3\}$ for every vertex, we seek the minimum-weight subgraph that contains, for…

A graph is rectilinear planar if it admits a planar orthogonal drawing without bends. While testing rectilinear planarity is NP-hard in general (Garg and Tamassia, 2001), it is a long-standing open problem to establish a tight upper bound…

Reliability evaluation and fault tolerance of an interconnection network of some parallel and distributed systems are discussed separately under various link-faulty hypotheses in terms of different $\mathcal{P}$-conditional…

Molecular graphs generally contain subgraphs (known as groups) that are identifiable and significant in composition, functionality, geometry, etc. Flat latent representations (node embeddings or graph embeddings) fail to represent, and…

Inspired by notorious combinatorial optimization problems on graphs, in this paper we consider a series of related problems defined using a metric space and topology determined by a graph. Particularly, we present the Independent Set,…

The betweenness structure of a finite metric space $M = (X, d)$ is a pair $\mathcal{B}(M) = (X,\beta_M)$ where $\beta_M$ is the so-called betweenness relation of $M$ that consists of point triplets $(x, y, z)$ such that $d(x, z) = d(x, y) +…

In \emph{smooth orthogonal layouts} of planar graphs, every edge is an alternating sequence of axis-aligned segments and circular arcs with common axis-aligned tangents. In this paper, we study the problem of finding smooth orthogonal…

We introduce the first graph kernels for metric graphs via tropical algebraic geometry. In contrast to conventional graph kernels based on graph combinatorics such as nodes, edges, and subgraphs, our metric graph kernels are purely based on…

A deep understanding of the intricate interactions between particles within a system is a key approach to revealing the essential characteristics of the system, whether it is an in-depth analysis of molecular properties in the field of…