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Two different kinetic theories [J. Solsvik and E. Manger (SM-theory), Phys. Fluids \textbf{33}, 043321 (2021) and V. Garz\'o, J. W. Dufty, and C. M. Hrenya (GDH-theory), Phys. Rev. E \textbf{76}, 031303 (2007)] are considered to determine…

统计力学 · 物理学 2023-02-23 Moisés García Chamorro , Vicente Garzó

A dynamical atomistic chain to simulate mechanical properties of a one-dimensional material with zero temperature may be modelled by the molecular dynamics (MD) model. Because the number of particles (atoms) is huge for a MD model, in…

数值分析 · 数学 2019-02-22 Mingjie Liao , Ping Lin

Coarse-grained (CG) models provide an effective route to reducing the complexity of molecular simulations (MD), but conventional approaches depend heavily on long all-atom MD trajectories to adequately sample configurational space. This…

化学物理 · 物理学 2025-10-28 Maximilian Stupp , P. S. Koutsourelakis

We report comprehensive simulations of the critical dynamics of a symmetric binary Lennard-Jones mixture near its consolute point. The self-diffusion coefficient exhibits no detectable anomaly. The data for the shear viscosity and the…

统计力学 · 物理学 2009-11-11 Subir K. Das , Michael E. Fisher , Jan V. Sengers , Juergen Horbach , Kurt Binder

Coarse-Graining (CG) models are low resolution approximation of high resolution models, such as all-atomic (AA) models. An effective CG model is expected to reproduce equilibrium values of sufficient physical quantities of its AA model,…

统计力学 · 物理学 2015-02-10 Shijing Lu , Xin Zhou

Complex fluids exhibit structure on a wide range of length and time scales, and hierarchical approaches are necessary to investigate all facets of their often unusual properties. The study of idealized coarse-grained models at different…

软凝聚态物质 · 物理学 2008-10-23 Friederike Schmid

Coupled length and time scales determine the dynamic behavior of polymers and underlie their unique viscoelastic properties. To resolve the long-time dynamics it is imperative to determine which time and length scales must be correctly…

软凝聚态物质 · 物理学 2016-02-16 K. Michael Salerno , Anupriya Agrawal , Dvora Perahia , Gary S. Grest

Coarse grain (CG) molecular dynamics (MD) can simulate systems inaccessible to fine grain (FG) MD simulations. A CG simulation decreases the degrees of freedom by mapping atoms from an FG representation into agglomerate CG particles. The FG…

化学物理 · 物理学 2018-10-08 Maghesree Chakraborty , Chenliang Xu , Andrew D. White

Coarse-grained (CG) models can provide computationally efficient and conceptually simple characterizations of soft matter systems. While generic models probe the underlying physics governing an entire family of free-energy landscapes,…

软凝聚态物质 · 物理学 2019-08-15 Joseph F. Rudzinski

Molecular dynamics computer simulation has been used to compute the self-diffusion coefficient, and shear viscosity of soft-sphere fluids, in which the particles interact through the soft-sphere or inverse power pair potential. The…

软凝聚态物质 · 物理学 2010-03-22 Yu. D. Fomin , V. V. Brazhkin , V. N. Ryzhov

We use molecular dynamics simulations to study the behavior of a compressible Lennard-Jones fluid in simple shear flow in a two-dimensional nanochannel. The system is equilibrated in the fluid phase close to the triple point at which gas,…

软凝聚态物质 · 物理学 2017-03-31 Madhu Priya , Yitzhak Rabin

Molecular dynamics (MD) simulations represent a powerful investigation tool in the field of soft matter. By using shear flows, one can probe the bulk rheology of complex fluids, also beyond the linear response regime, in a way that imitates…

软凝聚态物质 · 物理学 2021-09-30 Sebastian Bindgen , Florian Weik , Rudolf Weeber , Erin Koos , Pierre de Buyl

Coarse-grained (CG) conformational surface hopping (SH) adapts the concept of multisurface dynamics, initially developed to describe electronic transitions in chemical reactions, to accurately describe classical molecular dynamics at a…

软凝聚态物质 · 物理学 2021-02-03 Joseph F. Rudzinski , Tristan Bereau

We develop coarse-grained particle approaches for studying the elastic mechanics of vesicles with heterogeneous membranes having phase-separated domains. We perform simulations both of passive shape fluctuations and of active systems where…

软凝聚态物质 · 物理学 2023-02-28 David A. Rower , Paul J. Atzberger

Cohesive granular materials such as wet sand, snow, and powders can flow like a viscous liquid. However, the elementary mechanisms of momentum transport in such athermal particulate fluids are elusive. As a result, existing models for…

软凝聚态物质 · 物理学 2020-10-08 Matthew Macaulay , Pierre Rognon

Coarse-grained (CG) molecular dynamics simulations extend the length and time scale of atomistic simulations by replacing groups of correlated atoms with CG beads. Machine-learned coarse-graining (MLCG) has recently emerged as a promising…

化学物理 · 物理学 2025-06-25 Leon Klein , Atharva Kelkar , Aleksander Durumeric , Yaoyi Chen , Frank Noé

Capturing the correct dynamics at the Coarse-Grained (CG) scale remains a central challenge in the advancement of systematic CG models for soft matter simulations. The Generalized Langevin Equation (GLE), rooted in the Mori-Zwanzig…

软凝聚态物质 · 物理学 2024-10-14 Jinu Jeong , Ishan Nadkarni , Narayana. R. Aluru

We report on a molecular dynamics investigation of the wetting properties of graphitic surfaces by various solutions at concentrations 1-8 wt% of commercially available non-ionic surfactants with long hydrophilic chains, linear or T-shaped.…

化学物理 · 物理学 2012-09-12 Danilo Sergi , Giulio Scocchi , Alberto Ortona

Machine-learned coarse-grained (CG) models have the potential for simulating large molecular complexes beyond what is possible with atomistic molecular dynamics. However, training accurate CG models remains a challenge. A widely used…

Under many conditions, macroscopic grains flow like a fluid; kinetic theory pred icts continuum equations of motion for this granular fluid. In order to test the theory, we perform event driven molecular simulations of a two-dimensional gas…

统计力学 · 物理学 2009-10-31 C. Bizon , M. D. Shattuck , J. B. Swift , Harry L. Swinney