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Transitions in structural heterogeneity of colloidal depletion gels formed through short-range attractive interactions are correlated with their dynamical arrest. The system is a density and refractive index matched suspension of 0.20…

软凝聚态物质 · 物理学 2009-11-11 C. J. Dibble , M. Kogan , M. J. Solomon

Coagulation-fragmentation processes describe the stochastic association and dissociation of particles in clusters. Cluster dynamics with cluster-cluster interactions for a finite number of particles has recently attracted attention…

概率论 · 数学 2016-11-22 Nathanael Hoze , David Holcman

The proper functioning of multicellular organisms requires the robust establishment of precise proportions between distinct cell-types. This developmental differentiation process typically involves intracellular regulatory and stochastic…

细胞行为 · 定量生物学 2016-06-22 Benjamin Pfeuty , Kunihiko Kaneko

We solve the stochastic equations for a cluster of parallel bonds with shared constant loading, rebinding and the completely dissociated state as an absorbing boundary. In the small force regime, cluster lifetime grows only logarithmically…

软凝聚态物质 · 物理学 2007-05-23 T. Erdmann , U. S. Schwarz

We study conserved one-dimensional models of particle diffusion, attachment and detachment from clusters, where the detachment rates decrease with increasing cluster size as gamma(m) ~ m^{-k}, k>0. Heuristic scaling arguments based on…

统计力学 · 物理学 2009-11-13 F. D. A. Aarao Reis , R. B. Stinchcombe

Intracellular protein patterns are described by (nearly) mass-conserving reaction-diffusion systems. While these patterns initially form out of a homogeneous steady state due to the well-understood Turing instability, no general theory…

斑图形成与孤子 · 物理学 2024-01-11 Henrik Weyer , Fridtjof Brauns , Erwin Frey

We solve the standard Lifshitz-Slyozov (LS) model with conservation of total particles in the limit of small super-saturation. The new element is an effective initial condition that follows from the initial exhaustion of nucleation as…

材料科学 · 物理学 2013-05-29 Yossi Farjoun , John C. Neu

In many cellular signaling pathways, key components form clusters at the cell membrane. Although much work has focused on the mechanisms behind such cluster formation, the implications for downstream signaling remain poorly understood.…

分子网络 · 定量生物学 2012-03-14 Andrew Mugler , Aimee Gotway Bailey , Koichi Takahashi , Pieter Rein ten Wolde

A microscopic model of adsorption in cluster forming systems with competing interaction is considered. The adsorption process is described by the master equation and modelled by a kinetic Monte Carlo method. The evolution of the particle…

软凝聚态物质 · 物理学 2021-09-07 E. Bildanau , V. Vikhrenko

We investigate a class of stochastic aggregation processes involving two types of clusters: active and passive. The mass distribution is obtained analytically for several aggregation rates. When the aggregation rate is constant, we find…

统计力学 · 物理学 2007-05-23 P. L. Krapivsky , E. Ben-Naim

We develop a coagulation-fragmentation model to study a system composed of a small number of stochastic objects moving in a confined domain, that can aggregate upon binding to form local clusters of arbitrary sizes. A cluster can also…

亚细胞过程 · 定量生物学 2012-01-19 Nathanael Hoze , David Holcman

In this article, we study the kinetics of reversible ligand binding to receptors on a spherical cell surface using a self-consistent stochastic theory. Binding, dissociation, diffusion and rebinding of ligands are incorporated into the…

亚细胞过程 · 定量生物学 2009-11-13 Shivam Ghosh , Manoj Gopalakrishnan , Kimberly Forsten-Williams

We utilize a multiscale modeling framework to study the effect of shape, size and ligand composition on the efficacy of binding of a ligand-coated-particle to a substrate functionalized with the target receptors. First, we show how…

软凝聚态物质 · 物理学 2018-03-08 Matt McKenzie , Sung Min Ha , Aravind Rammohan , Ravi Radhakrishnan , N. Ramakrishnan

The dynamical arrest of attractive colloidal particles into out-of-equilibrium structures, known as gelation, is central to biophysics, materials science, nanotechnology, and food and cosmetic applications, but a complete understanding is…

软凝聚态物质 · 物理学 2020-07-22 Joep Rouwhorst , Christopher Ness , Simeon Stoyanov , Alessio Zaccone , Peter Schall

The dielectric behavior of a linear cluster of two or more living cells connected by tight junctions is analyzed using a spectral method. The polarizability of this system is obtained as an expansion over the eigenmodes of the linear…

生物物理 · 物理学 2010-02-12 Titus Sandu , Daniel Vrinceanu , Eugen Gheorghiu

Making sense of complex inhomogeneous systems composed of many interacting species is a grand challenge that pervades basically all natural sciences. Phase separation and pattern formation in reaction-diffusion systems have been largely…

软凝聚态物质 · 物理学 2025-06-04 Joshua F. Robinson , Thomas Machon , Thomas Speck

We analyze systems of clusters and interacting upon colliding---a collision between two clusters may lead to merging or fragmentation---and we also investigate the influence of additional spontaneous fragmentation events. We consider both…

We consider stochastic lattice gases with stationary product weights and a polynomial perturbation vanishing with the system size that leads to condensation. If the density of particles exceeds a critical value the system phase separates…

We study the formation of a colloidal gel by means of Molecular Dynamics simulations of a model for colloidal suspensions. A slowing down with gel-like features is observed at low temperatures and low volume fractions, due to the formation…

软凝聚态物质 · 物理学 2009-11-13 A. Fierro , E. Del Gado , A. de Candia , A. Coniglio

A specific class of coagulation and fragmentation coefficients is considered for which the strength of the coagulation is balanced by that of the multiple fragmentation. Existence and uniqueness of mass-conserving solutions are proved when…

偏微分方程分析 · 数学 2019-01-25 Philippe Laurençot