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The goal of these lectures is to review some mathematical aspects of random tree models used in evolutionary biology to model gene trees or species trees. We start with stochastic models of tree shapes (finite trees without edge lengths),…

概率论 · 数学 2017-08-30 Amaury Lambert

We study rooted planar random trees with a probability distribution which is proportional to a product of weight factors $w_n$ associated to the vertices of the tree and depending only on their individual degrees $n$. We focus on the case…

数学物理 · 物理学 2015-05-27 Svante Janson , Thordur Jonsson , Sigurdur Orn Stefansson

We find surprisingly simple formulas for the limiting probability that the rank of a randomly selected vertex in a randomly selected phylogenetic tree or generalized phylogenetic tree is a given integer.

组合数学 · 数学 2023-06-22 Miklós Bóna

We obtain new non-asymptotic tail bounds for the height of uniformly random trees with a given degree sequence, simply generated trees and conditioned Bienaym\'e trees (the family trees of branching processes), in the process settling three…

概率论 · 数学 2024-03-11 Louigi Addario-Berry , Serte Donderwinkel

We introduce a model for a growing random graph based on simultaneous reproduction of the vertices. The model can be thought of as a generalisation of the reproducing graphs of Southwell and Cannings and Bonato et al to allow for a random…

概率论 · 数学 2011-04-20 Jonathan Jordan

Ever since the Barab\'{a}si-Albert (BA) scale-free network has been proposed, network modeling has been studied intensively in light of the network growth and the preferential attachment (PA). However, numerous real systems are featured…

社会与信息网络 · 计算机科学 2025-11-25 Yuhan Li , Minyu Feng , Jürgen Kurths

Barab\'asi-Albert model describes many different natural networks, often yielding sensible explanations to the subjacent dynamics. However, finite size effects may prevent from discerning among different underlying physical mechanisms and…

物理与社会 · 物理学 2016-10-12 Ricardo M. Ferreira , Rita M. C. de Almeida , Leonardo G. Brunnet

We discuss several limiting degree distributions for a class of random threshold graphs in the many node regime. This analysis is carried out under a weak assumption on the distribution of the underlying fitness variable. This assumption,…

概率论 · 数学 2019-08-21 Armand M. Makowski , Siddharth Pal

We deal with a random graph model where at each step, a vertex is chosen uniformly at random, and it is either duplicated or its edges are deleted. Duplication has a given probability. We analyse the limit distribution of the degree of a…

概率论 · 数学 2014-09-19 Ágnes Backhausz , Tamás F. Móri

We consider growing random recursive trees in random environment, in which at each step a new vertex is attached (by an edge of a random length) to an existing tree vertex according to a probability distribution that assigns the tree…

概率论 · 数学 2007-05-23 Konstantin Borovkov , Vladimir Vatutin

This study is dedicated to precise distributional analyses of the height of non-plane unlabelled binary trees ("Otter trees"), when trees of a given size are taken with equal likelihood. The height of a rooted tree of size $n$ is proved to…

概率论 · 数学 2012-11-12 Nicolas Broutin , Philippe Flajolet

In [1] a detailed analysis was given of the large-time asymptotics of the total mass of the solution to the parabolic Anderson model on a supercritical Galton-Watson random tree with an i.i.d. random potential whose marginal distribution is…

概率论 · 数学 2022-09-07 Frank den Hollander , Daoyi Wang

We study a model of random $\mathcal{R}$-enriched trees that is based on weights on the $\mathcal{R}$-structures and allows for a unified treatment of a large family of random discrete structures. We establish distributional limits…

概率论 · 数学 2018-12-12 Benedikt Stufler

This paper concerns the long term behaviour of a growth model describing a random sequential deposition of particles on a finite graph. The probability of allocating a particle at a vertex is proportional to a log-linear function of numbers…

概率论 · 数学 2020-04-13 Mikhail Menshikov , Vadim Shcherbakov

The diameter distribution of a given species of deciduous trees in mature, temperate zone forests is well approximated by a Gamma distribution. Here we give new experimental evidence for this conjecture by analyzing deciduous tree size data…

种群与进化 · 定量生物学 2023-10-17 Szabolcs Kelemen , Máté Józsa , Tibor Hartel , György Csóka , Zoltán Néda

We study the number of random records in an arbitrary split tree (or equivalently, the number of random cuttings required to eliminate the tree). We show that a classical limit theorem for convergence of sums of triangular arrays to…

概率论 · 数学 2010-05-26 Cecilia Holmgren

We prove almost sure convergence of the maximum degree in an evolving tree model combining local choice and preferential attachment. At each step in the growth of the graph, a new vertex is introduced. A fixed, finite number of possible…

概率论 · 数学 2014-03-19 Yury Malyshkin , Elliot Paquette

We study a model of growing planar tree graphs where in each time step we separate the tree into two components by splitting a vertex and then connect the two pieces by inserting a new link between the daughter vertices. This model…

统计力学 · 物理学 2009-11-13 Francois David , Mark Dukes , Thordur Jonsson , Sigurdur Orn Stefansson

A power law degree distribution is established for a graph evolution model based on the graph class of k-trees. This k-tree-based graph process can be viewed as an idealized model that captures some characteristics of the preferential…

离散数学 · 计算机科学 2008-11-27 Yong Gao

We investigate the influence of the network's size on the degree distribution in Barabasi-Albert model of growing network with initial attractiveness. Our approach based on spectral moments allows to treat analytically several variants of…

统计力学 · 物理学 2007-06-13 B. Waclaw , I. M. Sokolov