相关论文: Characterization of Knots and Links Arising From S…
We develop a topological model of knots and links arising from a single (or multiple processive) round(s) of recombination starting with an unknot, unlink, or (2,m)-torus knot or link substrate. We show that all knotted or linked products…
We develop a topological model of site-specific recombination that applies to substrates which are the connected sum of two torus links of the form $T(2,n)\#T(2,m)$. Then we use our model to prove that all knots and links that can be…
Site-specific recombination on supercoiled circular DNA molecules can yield a variety of knots and catenanes. Twist knots are some of the most common conformations of these products and they can act as substrates for further rounds of…
Site-specific recombination on supercoiled circular DNA yields a variety of knotted or catenated products. We develop a model of this process, and give extensive experimental evidence that the assumptions of our model are reasonable. We…
Site-specific recombination is an enzymatic process where two sites of precise sequence and orientation along a circle come together, are cleaved, and the ends are recombined. Site-specific recombination on a knotted substrate produces…
We model the typical behavior of knots and links using grid diagrams. Links are ubiquitous in the sciences, and their "normal" or "typical" behavior is of significant importance in understanding situations such as the topological state of…
This paper gives new and elementary combinatorial topological proofs of the classification of unoriented and oriented rational knots and links. These proofs are based on the known classification of alternating knots through flyping, and the…
Almost a decade ago Vaughan Jones introduced a method to produce knots from elements of the Thompson groups $F$, which was later extended to the Brown-Thompson group $F_3$. In this article we define a way to produce permutations out of…
Twisting a given knot $K$ about an unknotted circle $c$ a full $n \in \mathbb{N}$ times, we obtain a "twist family" of knots $\{ K_n \}$. Work of Kouno-Motegi-Shibuya implies that for a non-trivial twist family the crossing numbers…
Although rare, an increasing number of proteins have been observed to contain entanglements in their native structures. To gain more insight into the significance of protein knotting, researchers have been investigating protein knot…
The study of knots and links from a probabilistic viewpoint provides insight into the behavior of "typical" knots, and opens avenues for new constructions of knots and other topological objects with interesting properties. The knotting of…
Families of alternating knots (links) and tangles are studied using as building block the conway defined as the twisting of two strands. The regular representation of knots assumes the projection has the minimal number of overpassings, and…
In this paper, we introduce a new type of relation between knots called the descendant relation. One knot $H$ is a descendant of another knot $K$ if $H$ can be obtained from a minimal crossing diagram of $K$ by some number of crossing…
Frequently, knots are enumerated by their crossing number. However, the number of knots with crossing number $c$ grows exponentially with $c$, and to date computer-assisted proofs can only classify diagrams up to around twenty crossings.…
In this paper, we study a geometric/topological measure of knots and links called the nullification number. The nullification of knots/links is believed to be biologically relevant. For example, in DNA topology, one can intuitively regard…
Ropelength and embedding thickness are related measures of geometric complexity of classical knots and links in Euclidean space. In their recent work, Freedman and Krushkal posed a question regarding lower bounds for embedding thickness of…
A rational knot or link can be put into a standard alternating format which has horizontal and vertical twist sites (double helices). The number and type of these twist sites are determined by terms of next-to-highest $z$-degree in…
Ascending numbers are determined for 64 knots with at most n=10 crossings. After proving the theorem about the signature of alternating knot families, we distinguished all families of knots obtained from generating alternating knots with at…
Given a representation of a link group, we introduce a trilinear form, as a topological invariant. We show that, if the link is either hyperbolic or a knot with malnormality, then the trilinear form equals the pairing of the (twisted)…
Many well studied knots can be realized as positive braid knots where the braid word contains a positive full twist; we say that such knots are twist positive. Some important families of knots are twist positive, including torus knots,…